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(-) Description

Title :  CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT
 
Authors :  J. L. Sussman, S. R. Holbrook, R. W. Warrant, G. M. Church, S. -H. Kim
Date :  16 Nov 78  (Deposition) - 16 Jan 79  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  T-Rna, Single Strand, Loops (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. L. Sussman, S. R. Holbrook, R. W. Warrant, G. M. Church, S. H. Kim
Crystal Structure Of Yeast Phenylalanine Transfer Rna. I. Crystallographic Refinement.
J. Mol. Biol. V. 123 607 1978
PubMed-ID: 357742  |  Reference-DOI: 10.1016/0022-2836(78)90209-7
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRNAPHE
    ChainsA
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (12, 18)

Asymmetric/Biological Unit (12, 18)
No.NameCountTypeFull Name
11MA1Mod. Nucleotide6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
22MG1Mod. Nucleotide2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
35MC2Mod. Nucleotide5-METHYLCYTIDINE-5'-MONOPHOSPHATE
45MU1Mod. Nucleotide5-METHYLURIDINE 5'-MONOPHOSPHATE
57MG1Mod. Nucleotide7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6H2U2Mod. Nucleotide5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
7M2G1Mod. NucleotideN2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
8MG4Ligand/IonMAGNESIUM ION
9OMC1Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
10OMG1Mod. NucleotideO2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
11PSU2Mod. NucleotidePSEUDOURIDINE-5'-MONOPHOSPHATE
12YG1Mod. ResidueWYBUTOSINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:19 , HOH A:145 , HOH A:146 , HOH A:147 , HOH A:148 , HOH A:149BINDING SITE FOR RESIDUE MG A 77
2AC2SOFTWAREH2U A:16 , G A:20 , A A:21 , HOH A:150 , HOH A:151 , HOH A:152 , HOH A:153BINDING SITE FOR RESIDUE MG A 78
3AC3SOFTWAREU A:8 , U A:12 , HOH A:133 , HOH A:154 , HOH A:155 , HOH A:156 , HOH A:157 , HOH A:158 , HOH A:159BINDING SITE FOR RESIDUE MG A 79
4AC4SOFTWAREYG A:37 , HOH A:160 , HOH A:161 , HOH A:162 , HOH A:163 , HOH A:164BINDING SITE FOR RESIDUE MG A 80

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 6TNA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 6TNA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 6TNA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 6TNA)

(-) Exons   (0, 0)

(no "Exon" information available for 6TNA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:RNA  Length:76
                                                                                                           
                  6tna A  1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA 76
                                    10     || 20     |  30 | |  | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G | |  | ||     |  |    55-PSU                 
                                          16-H2U          32-OMC| ||     |  |    |  58-1MA              
                                           17-H2U           34-OMG||     |  |    |                      
                                                               37-YG     |  |    |                      
                                                                 39-PSU  |  |    |                      
                                                                  40-5MC |  |    |                      
                                                                        46-7MG   |                      
                                                                           49-5MC|                      
                                                                                54-5MU                  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 6TNA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 6TNA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 6TNA)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 6TNA)

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