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(-) Description

Title :  2-ENOYL-COA HYDRATASE, DATA COLLECTED AT 100 K, PH 6.5
 
Authors :  R. K. Wierenga, C. K. Engel
Date :  10 Jun 96  (Deposition) - 07 Jul 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Beta-Oxidation, Coa, Crotonase, Enoyl-Coa Hydratase, Fatty Acid Metabolism, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. K. Engel, M. Mathieu, J. P. Zeelen, J. K. Hiltunen, R. K. Wierenga
Crystal Structure Of Enoyl-Coenzyme A (Coa) Hydratase At 2. 5 Angstroms Resolution: A Spiral Fold Defines The Coa-Binding Pocket.
Embo J. V. 15 5135 1996
PubMed-ID: 8895557
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 2-ENOYL-COA HYDRATASE
    ChainsA, B, C, D, E, F
    EC Number4.2.1.17
    OrganLIVER
    Organism CommonNORWAY RAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymCROTONASE, ENOYL-COA HYDRATASE 1

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1CAA5Ligand/IonACETOACETYL-COENZYME A

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:56 , ALA A:57 , LEU A:58 , ALA A:60 , LYS A:92 , ALA A:96 , ALA A:98 , ASP A:99 , ILE A:100 , LYS A:101 , LEU A:117 , LEU A:139 , GLY A:140 , GLY A:141 , GLU A:144 , PRO A:163 , GLU A:164 , LEU A:167 , GLY A:172 , HOH A:357 , HOH A:372 , HOH A:378 , PHE B:279 , LYS B:282 , CAA E:300 , HOH E:394 , LYS F:282BINDING SITE FOR RESIDUE CAA A 300
2AC2SOFTWARELYS B:56 , ALA B:57 , LEU B:58 , ALA B:60 , LYS B:92 , ALA B:96 , ALA B:98 , ASP B:99 , ILE B:100 , LYS B:101 , MET B:103 , LEU B:117 , LEU B:139 , GLY B:140 , GLY B:141 , GLU B:144 , PRO B:163 , GLU B:164 , LEU B:167 , GLY B:172 , HOH B:369 , PHE C:279 , LYS C:282BINDING SITE FOR RESIDUE CAA B 300
3AC3SOFTWAREPHE A:263 , PHE A:279 , LYS A:282 , LYS C:43 , ASN C:44 , LYS C:56 , ALA C:57 , LEU C:58 , ALA C:60 , LYS C:92 , ALA C:96 , GLY C:97 , ALA C:98 , ILE C:100 , LEU C:117 , TYR C:137 , LEU C:139 , GLY C:140 , GLY C:141 , GLU C:144 , PRO C:163 , GLU C:164 , LEU C:167 , GLY C:172BINDING SITE FOR RESIDUE CAA C 300
4AC4SOFTWARECAA A:300 , LYS B:282 , LYS E:56 , ALA E:57 , LEU E:58 , ALA E:60 , LYS E:92 , ALA E:96 , ALA E:98 , ASP E:99 , ILE E:100 , LYS E:101 , MET E:103 , LEU E:139 , GLY E:140 , GLY E:141 , GLU E:144 , PRO E:163 , GLU E:164 , LEU E:167 , GLY E:172 , HOH E:358 , HOH E:360 , HOH E:394 , PHE F:263 , PHE F:279 , LYS F:282BINDING SITE FOR RESIDUE CAA E 300
5AC5SOFTWAREPHE D:263 , PHE D:279 , LYS F:56 , ALA F:57 , LEU F:58 , ALA F:60 , LYS F:92 , ALA F:96 , ALA F:98 , ASP F:99 , ILE F:100 , LYS F:101 , LEU F:117 , TYR F:137 , LEU F:139 , GLY F:140 , GLY F:141 , GLU F:144 , PRO F:163 , GLU F:164 , LEU F:167 , GLY F:172BINDING SITE FOR RESIDUE CAA F 300
6CR1UNKNOWNGLU A:144CATALYTIC RESIDUE 1.
7CR2UNKNOWNGLU A:164CATALYTIC RESIDUE 2.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DUB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DUB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DUB)

(-) PROSITE Motifs  (1, 6)

Asymmetric/Biological Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ENOYL_COA_HYDRATASEPS00166 Enoyl-CoA hydratase/isomerase signature.ECHM_RAT131-151
 
 
 
 
 
  6A:131-151
B:131-151
C:131-151
D:131-151
E:131-151
F:131-151

(-) Exons   (7, 42)

Asymmetric/Biological Unit (7, 42)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSRNOT000000254461ENSRNOE00000179019chr1:199910412-199910308105ECHM_RAT1-30300--
1.2ENSRNOT000000254462ENSRNOE00000180786chr1:199908251-199908054198ECHM_RAT30-96676A:31-96
B:32-96
C:32-96
D:31-96
E:31-96
F:32-96
66
65
65
66
66
65
1.3ENSRNOT000000254463ENSRNOE00000180948chr1:199907664-199907537128ECHM_RAT96-138436A:96-138
B:96-138
C:96-138
D:96-138
E:96-138
F:96-138
43
43
43
43
43
43
1.4ENSRNOT000000254464ENSRNOE00000181097chr1:199906925-199906826100ECHM_RAT139-172346A:139-172
B:139-172
C:139-172
D:139-172
E:139-172
F:139-172
34
34
34
34
34
34
1.5ENSRNOT000000254465ENSRNOE00000181259chr1:199905995-199905891105ECHM_RAT172-207366A:172-207
B:172-207
C:172-207
D:172-207
E:172-207
F:172-207
36
36
36
36
36
36
1.6ENSRNOT000000254466ENSRNOE00000179510chr1:199905454-199905335120ECHM_RAT207-247416A:207-247
B:207-247
C:207-247
D:207-247
E:207-247
F:207-247
41
41
41
41
41
41
1.7ENSRNOT000000254467ENSRNOE00000181392chr1:199903551-19990348468ECHM_RAT247-269236A:247-269
B:247-269
C:247-269
D:247-269
E:247-269
F:247-269
23
23
23
23
23
23
1.8ENSRNOT000000254468ENSRNOE00000181536chr1:199902222-199901588635ECHM_RAT270-290216A:270-290
B:270-290
C:270-290
D:270-290
E:270-290
F:270-290
21
21
21
21
21
21

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:260
 aligned with ECHM_RAT | P14604 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:260
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290
             ECHM_RAT    31 ANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
               SCOP domains d1duba_ A: Enoyl-CoA hydratase (crotonase)                                                                                                                                                                                                                           SCOP domains
               CATH domains 1dubA01 A:31-232 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                 1dubA02 A:233-290                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.....eeeeee..........hhhhhhhhhhhhhhhh.....eeeee....eee....hhhh....hhhhhh................eeeee..eee.hhhhhhhh..eeeee...eee................hhhhhh.hhhhhhhhhh...eehhhhhhh....eee....hhhhhhhhhhhhhh..hhhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:31-96 UniProt: 30-96 [INCOMPLETE]                ------------------------------------------Exon 1.4  PDB: A:139-172          ----------------------------------Exon 1.6  PDB: A:207-247 UniProt: 207-247----------------------Exon 1.8              Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------Exon 1.3  PDB: A:96-138 UniProt: 96-138    ---------------------------------Exon 1.5  PDB: A:172-207            ---------------------------------------Exon 1.7  PDB: A:247-26--------------------- Transcript 1 (2)
                 1dub A  31 ANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain B from PDB  Type:PROTEIN  Length:259
 aligned with ECHM_RAT | P14604 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:259
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         
             ECHM_RAT    32 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
               SCOP domains d1dubb_ B: Enoyl-CoA hydratase (crotonase)                                                                                                                                                                                                                          SCOP domains
               CATH domains 1dubB01 B:32-232 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                1dubB02 B:233-290                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeeeee..........hhhhhhhhhhhhhhhh.....eeeee....eee....hhhh....hhhhhh................eeeee..eee.hhhhhhhh..eeeee...eee................hhhhhh.hhhhhhhhhh...eehhhhhhh....eee....hhhhhhhhhhhhhh..hhhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: B:32-96 UniProt: 30-96 [INCOMPLETE]               ------------------------------------------Exon 1.4  PDB: B:139-172          ----------------------------------Exon 1.6  PDB: B:207-247 UniProt: 207-247----------------------Exon 1.8              Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.3  PDB: B:96-138 UniProt: 96-138    ---------------------------------Exon 1.5  PDB: B:172-207            ---------------------------------------Exon 1.7  PDB: B:247-26--------------------- Transcript 1 (2)
                 1dub B  32 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         

Chain C from PDB  Type:PROTEIN  Length:259
 aligned with ECHM_RAT | P14604 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:259
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         
             ECHM_RAT    32 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
               SCOP domains d1dubc_ C: Enoyl-CoA hydratase (crotonase)                                                                                                                                                                                                                          SCOP domains
               CATH domains 1dubC01 C:32-232 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                1dubC02 C:233-290                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeeeee..........hhhhhhhhhhhhhhhh.....eeeee....eee....hhhh....hhhhhh................eeeee..eee.hhhhhhhh..eeeee...eee................hhhhhh.hhhhhhhhhh...eehhhhhhh....eee....hhhhhhhhhhhhhh..hhhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: C:32-96 UniProt: 30-96 [INCOMPLETE]               ------------------------------------------Exon 1.4  PDB: C:139-172          ----------------------------------Exon 1.6  PDB: C:207-247 UniProt: 207-247----------------------Exon 1.8              Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.3  PDB: C:96-138 UniProt: 96-138    ---------------------------------Exon 1.5  PDB: C:172-207            ---------------------------------------Exon 1.7  PDB: C:247-26--------------------- Transcript 1 (2)
                 1dub C  32 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         

Chain D from PDB  Type:PROTEIN  Length:260
 aligned with ECHM_RAT | P14604 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:260
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290
             ECHM_RAT    31 ANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
               SCOP domains d1dubd_ D: Enoyl-CoA hydratase (crotonase)                                                                                                                                                                                                                           SCOP domains
               CATH domains 1dubD01 D:31-232 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                 1dubD02 D:233-290                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.....eeeeee..........hhhhhhhhhhhhhhhh.....eeeee....eee....hhhh....hhhhhh................eeeee..eee.hhhhhhhh..eeeee...eee................hhhhhh.hhhhhhhhhh...eehhhhhhh....eee....hhhhhhhhhhhhhh..hhhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: D:31-96 UniProt: 30-96 [INCOMPLETE]                ------------------------------------------Exon 1.4  PDB: D:139-172          ----------------------------------Exon 1.6  PDB: D:207-247 UniProt: 207-247----------------------Exon 1.8              Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------Exon 1.3  PDB: D:96-138 UniProt: 96-138    ---------------------------------Exon 1.5  PDB: D:172-207            ---------------------------------------Exon 1.7  PDB: D:247-26--------------------- Transcript 1 (2)
                 1dub D  31 ANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain E from PDB  Type:PROTEIN  Length:260
 aligned with ECHM_RAT | P14604 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:260
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290
             ECHM_RAT    31 ANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
               SCOP domains d1dube_ E: Enoyl-CoA hydratase (crotonase)                                                                                                                                                                                                                           SCOP domains
               CATH domains 1dubE01 E:31-232 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                 1dubE02 E:233-290                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.....eeeeee..........hhhhhhhhhhhhhhhh.....eeeee....eee....hhhh....hhhhhh................eeeee..eee.hhhhhhhh..eeeee...eee................hhhhhh.hhhhhhhhhh...eehhhhhhh....eee....hhhhhhhhhhhhhh..hhhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: E:31-96 UniProt: 30-96 [INCOMPLETE]                ------------------------------------------Exon 1.4  PDB: E:139-172          ----------------------------------Exon 1.6  PDB: E:207-247 UniProt: 207-247----------------------Exon 1.8              Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------Exon 1.3  PDB: E:96-138 UniProt: 96-138    ---------------------------------Exon 1.5  PDB: E:172-207            ---------------------------------------Exon 1.7  PDB: E:247-26--------------------- Transcript 1 (2)
                 1dub E  31 ANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain F from PDB  Type:PROTEIN  Length:259
 aligned with ECHM_RAT | P14604 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:259
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         
             ECHM_RAT    32 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
               SCOP domains d1dubf_ F: Enoyl-CoA hydratase (crotonase)                                                                                                                                                                                                                          SCOP domains
               CATH domains 1dubF01 F:32-232 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                1dubF02 F:233-290                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeeeee..........hhhhhhhhhhhhhhhh.....eeeee....eee....hhhh....hhhhhh................eeeee..eee.hhhhhhhh..eeeee...eee................hhhhhh.hhhhhhhhhh...eehhhhhhh....eee....hhhhhhhhhhhhhh..hhhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: F:32-96 UniProt: 30-96 [INCOMPLETE]               ------------------------------------------Exon 1.4  PDB: F:139-172          ----------------------------------Exon 1.6  PDB: F:207-247 UniProt: 207-247----------------------Exon 1.8              Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.3  PDB: F:96-138 UniProt: 96-138    ---------------------------------Exon 1.5  PDB: F:172-207            ---------------------------------------Exon 1.7  PDB: F:247-26--------------------- Transcript 1 (2)
                 1dub F  32 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 290
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DUB)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (ECHM_RAT | P14604)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004300    enoyl-CoA hydratase activity    Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2-enoyl-CoA + H2O.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0006635    fatty acid beta-oxidation    A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).
    GO:0006631    fatty acid metabolic process    The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ECHM_RAT | P146041ey3 1mj3 2dub

(-) Related Entries Specified in the PDB File

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