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1DUB
Asym. Unit
Info
Asym.Unit (264 KB)
Biol.Unit 1 (257 KB)
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(1)
Title
:
2-ENOYL-COA HYDRATASE, DATA COLLECTED AT 100 K, PH 6.5
Authors
:
R. K. Wierenga, C. K. Engel
Date
:
10 Jun 96 (Deposition) - 07 Jul 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Beta-Oxidation, Coa, Crotonase, Enoyl-Coa Hydratase, Fatty Acid Metabolism, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. K. Engel, M. Mathieu, J. P. Zeelen, J. K. Hiltunen, R. K. Wierenga
Crystal Structure Of Enoyl-Coenzyme A (Coa) Hydratase At 2. 5 Angstroms Resolution: A Spiral Fold Defines The Coa-Binding Pocket.
Embo J. V. 15 5135 1996
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: ACETOACETYL-COENZYME A (CAAa)
1b: ACETOACETYL-COENZYME A (CAAb)
1c: ACETOACETYL-COENZYME A (CAAc)
1d: ACETOACETYL-COENZYME A (CAAd)
1e: ACETOACETYL-COENZYME A (CAAe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAA
5
Ligand/Ion
ACETOACETYL-COENZYME A
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: CR1 (UNKNOWN)
7: CR2 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:56 , ALA A:57 , LEU A:58 , ALA A:60 , LYS A:92 , ALA A:96 , ALA A:98 , ASP A:99 , ILE A:100 , LYS A:101 , LEU A:117 , LEU A:139 , GLY A:140 , GLY A:141 , GLU A:144 , PRO A:163 , GLU A:164 , LEU A:167 , GLY A:172 , HOH A:357 , HOH A:372 , HOH A:378 , PHE B:279 , LYS B:282 , CAA E:300 , HOH E:394 , LYS F:282
BINDING SITE FOR RESIDUE CAA A 300
2
AC2
SOFTWARE
LYS B:56 , ALA B:57 , LEU B:58 , ALA B:60 , LYS B:92 , ALA B:96 , ALA B:98 , ASP B:99 , ILE B:100 , LYS B:101 , MET B:103 , LEU B:117 , LEU B:139 , GLY B:140 , GLY B:141 , GLU B:144 , PRO B:163 , GLU B:164 , LEU B:167 , GLY B:172 , HOH B:369 , PHE C:279 , LYS C:282
BINDING SITE FOR RESIDUE CAA B 300
3
AC3
SOFTWARE
PHE A:263 , PHE A:279 , LYS A:282 , LYS C:43 , ASN C:44 , LYS C:56 , ALA C:57 , LEU C:58 , ALA C:60 , LYS C:92 , ALA C:96 , GLY C:97 , ALA C:98 , ILE C:100 , LEU C:117 , TYR C:137 , LEU C:139 , GLY C:140 , GLY C:141 , GLU C:144 , PRO C:163 , GLU C:164 , LEU C:167 , GLY C:172
BINDING SITE FOR RESIDUE CAA C 300
4
AC4
SOFTWARE
CAA A:300 , LYS B:282 , LYS E:56 , ALA E:57 , LEU E:58 , ALA E:60 , LYS E:92 , ALA E:96 , ALA E:98 , ASP E:99 , ILE E:100 , LYS E:101 , MET E:103 , LEU E:139 , GLY E:140 , GLY E:141 , GLU E:144 , PRO E:163 , GLU E:164 , LEU E:167 , GLY E:172 , HOH E:358 , HOH E:360 , HOH E:394 , PHE F:263 , PHE F:279 , LYS F:282
BINDING SITE FOR RESIDUE CAA E 300
5
AC5
SOFTWARE
PHE D:263 , PHE D:279 , LYS F:56 , ALA F:57 , LEU F:58 , ALA F:60 , LYS F:92 , ALA F:96 , ALA F:98 , ASP F:99 , ILE F:100 , LYS F:101 , LEU F:117 , TYR F:137 , LEU F:139 , GLY F:140 , GLY F:141 , GLU F:144 , PRO F:163 , GLU F:164 , LEU F:167 , GLY F:172
BINDING SITE FOR RESIDUE CAA F 300
6
CR1
UNKNOWN
GLU A:144
CATALYTIC RESIDUE 1.
7
CR2
UNKNOWN
GLU A:164
CATALYTIC RESIDUE 2.
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: ENOYL_COA_HYDRATASE (A:131-151,B:131-151,C:131-151,D:13...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOYL_COA_HYDRATASE
PS00166
Enoyl-CoA hydratase/isomerase signature.
ECHM_RAT
131-151
6
A:131-151
B:131-151
C:131-151
D:131-151
E:131-151
F:131-151
[
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]
Exons
(7, 42)
Info
All Exons
Exon 1.2 (A:31-96 | B:32-96 | C:32-96 | D:31...)
Exon 1.3 (A:96-138 | B:96-138 | C:96-138 | D...)
Exon 1.4 (A:139-172 | B:139-172 | C:139-172 ...)
Exon 1.5 (A:172-207 | B:172-207 | C:172-207 ...)
Exon 1.6 (A:207-247 | B:207-247 | C:207-247 ...)
Exon 1.7 (A:247-269 | B:247-269 | C:247-269 ...)
Exon 1.8 (A:270-290 | B:270-290 | C:270-290 ...)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000025446
1
ENSRNOE00000179019
chr1:
199910412-199910308
105
ECHM_RAT
1-30
30
0
-
-
1.2
ENSRNOT00000025446
2
ENSRNOE00000180786
chr1:
199908251-199908054
198
ECHM_RAT
30-96
67
6
A:31-96
B:32-96
C:32-96
D:31-96
E:31-96
F:32-96
66
65
65
66
66
65
1.3
ENSRNOT00000025446
3
ENSRNOE00000180948
chr1:
199907664-199907537
128
ECHM_RAT
96-138
43
6
A:96-138
B:96-138
C:96-138
D:96-138
E:96-138
F:96-138
43
43
43
43
43
43
1.4
ENSRNOT00000025446
4
ENSRNOE00000181097
chr1:
199906925-199906826
100
ECHM_RAT
139-172
34
6
A:139-172
B:139-172
C:139-172
D:139-172
E:139-172
F:139-172
34
34
34
34
34
34
1.5
ENSRNOT00000025446
5
ENSRNOE00000181259
chr1:
199905995-199905891
105
ECHM_RAT
172-207
36
6
A:172-207
B:172-207
C:172-207
D:172-207
E:172-207
F:172-207
36
36
36
36
36
36
1.6
ENSRNOT00000025446
6
ENSRNOE00000179510
chr1:
199905454-199905335
120
ECHM_RAT
207-247
41
6
A:207-247
B:207-247
C:207-247
D:207-247
E:207-247
F:207-247
41
41
41
41
41
41
1.7
ENSRNOT00000025446
7
ENSRNOE00000181392
chr1:
199903551-199903484
68
ECHM_RAT
247-269
23
6
A:247-269
B:247-269
C:247-269
D:247-269
E:247-269
F:247-269
23
23
23
23
23
23
1.8
ENSRNOT00000025446
8
ENSRNOE00000181536
chr1:
199902222-199901588
635
ECHM_RAT
270-290
21
6
A:270-290
B:270-290
C:270-290
D:270-290
E:270-290
F:270-290
21
21
21
21
21
21
[
close EXON info
]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1duba_ (A:)
1b: SCOP_d1dubb_ (B:)
1c: SCOP_d1dubc_ (C:)
1d: SCOP_d1dubd_ (D:)
1e: SCOP_d1dube_ (E:)
1f: SCOP_d1dubf_ (F:)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Crotonase-like
(39)
Protein domain
:
Enoyl-CoA hydratase (crotonase)
(5)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
1a
d1duba_
A:
1b
d1dubb_
B:
1c
d1dubc_
C:
1d
d1dubd_
D:
1e
d1dube_
E:
1f
d1dubf_
F:
[
close SCOP info
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1dubA01 (A:31-232)
1b: CATH_1dubD01 (D:31-232)
1c: CATH_1dubE01 (E:31-232)
1d: CATH_1dubB01 (B:32-232)
1e: CATH_1dubC01 (C:32-232)
1f: CATH_1dubF01 (F:32-232)
2a: CATH_1dubA02 (A:233-290)
2b: CATH_1dubB02 (B:233-290)
2c: CATH_1dubC02 (C:233-290)
2d: CATH_1dubD02 (D:233-290)
2e: CATH_1dubE02 (E:233-290)
2f: CATH_1dubF02 (F:233-290)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Norway rat (Rattus norvegicus)
(6)
1a
1dubA01
A:31-232
1b
1dubD01
D:31-232
1c
1dubE01
E:31-232
1d
1dubB01
B:32-232
1e
1dubC01
C:32-232
1f
1dubF01
F:32-232
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lyase 2-enoyl-coa Hydratase; Chain A, domain 2
(25)
Homologous Superfamily
:
Lyase 2-enoyl-coa Hydratase, Chain A, domain 2
(25)
Norway rat (Rattus norvegicus)
(5)
2a
1dubA02
A:233-290
2b
1dubB02
B:233-290
2c
1dubC02
C:233-290
2d
1dubD02
D:233-290
2e
1dubE02
E:233-290
2f
1dubF02
F:233-290
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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