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(-) Description

Title :  DCOH, A BIFUNCTIONAL PROTEIN-BINDING TRANSCRIPTIONAL COACTIVATOR
 
Authors :  J. D. Cronk, J. A. Endrizzi, T. Alber
Date :  16 May 96  (Deposition) - 07 Dec 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Transcriptional Stimulator, Dimerization Cofactor, Dehydratase, 4A-Carbinolamine Dehydratase, Transregulator Of Homeodomain Proteins (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. D. Cronk, J. A. Endrizzi, T. Alber
High-Resolution Structures Of The Bifunctional Enzyme And Transcriptional Coactivator Dcoh And Its Complex With A Product Analogue.
Protein Sci. V. 5 1963 1996
PubMed-ID: 8897596
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DCOH
    ChainsA, B, C, D, E, F, G, H
    EC Number4.2.1.96
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX-2T (PHARMACIA)
    Expression System Taxid562
    Expression System Vector TypePGEX-2T
    OrganLIVER
    Organism CommonNORWAY RAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    Other DetailsGST-FUSION
    SynonymDIMERIZATION COFACTOR OF HEPATOCYTE NUCLEAR FACTOR 1-ALPHA, HNF-1, PHS, PHENYLALANINE HYDROXYLASE STIMULATOR

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1DCO)

(-) Sites  (0, 0)

(no "Site" information available for 1DCO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DCO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DCO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DCO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1DCO)

(-) Exons   (3, 24)

Asymmetric Unit (3, 24)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSRNOT000000006871ENSRNOE00000458408chr20:28366640-2836665516PHS_RAT-00--
1.2ENSRNOT000000006872ENSRNOE00000433258chr20:28448637-2844872084PHS_RAT1-110--
1.3ENSRNOT000000006873ENSRNOE00000004350chr20:28451543-28451674132PHS_RAT2-45448A:6-45
B:6-45
C:6-45
D:6-45
E:6-45
F:6-45
G:6-45
H:6-45
40
40
40
40
40
40
40
40
1.4ENSRNOT000000006874ENSRNOE00000004351chr20:28452067-2845214781PHS_RAT46-72278A:46-72
B:46-72
C:46-72
D:46-72
E:46-72
F:46-72
G:46-72
H:46-72
27
27
27
27
27
27
27
27
1.5ENSRNOT000000006875ENSRNOE00000004352chr20:28453672-28454164493PHS_RAT73-104328A:73-104
B:73-104
C:73-104
D:73-104
E:73-104
F:73-104
G:73-104
H:73-104
32
32
32
32
32
32
32
32

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:99
 aligned with PHS_RAT | P61459 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:99
                                    15        25        35        45        55        65        75        85        95         
              PHS_RAT     6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
               SCOP domains d1dcoa_ A: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)           SCOP domains
               CATH domains 1dcoA00 A:6-104  [code=3.30.1360.20, no name defined]                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhhhhh....eeee...eeeeee.........hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: A:6-45 UniProt: 2-45     Exon 1.4  PDB: A:46-72     Exon 1.5  PDB: A:73-104          Transcript 1
                 1dco A   6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
                                    15        25        35        45        55        65        75        85        95         

Chain B from PDB  Type:PROTEIN  Length:99
 aligned with PHS_RAT | P61459 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:99
                                    15        25        35        45        55        65        75        85        95         
              PHS_RAT     6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
               SCOP domains d1dcob_ B: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)           SCOP domains
               CATH domains 1dcoB00 B:6-104  [code=3.30.1360.20, no name defined]                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh.hhhh............eeeeee...hhhhhhhhhhhhhhhhhh....eeee...eeeeee.........hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: B:6-45 UniProt: 2-45     Exon 1.4  PDB: B:46-72     Exon 1.5  PDB: B:73-104          Transcript 1
                 1dco B   6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
                                    15        25        35        45        55        65        75        85        95         

Chain C from PDB  Type:PROTEIN  Length:99
 aligned with PHS_RAT | P61459 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:99
                                    15        25        35        45        55        65        75        85        95         
              PHS_RAT     6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
               SCOP domains d1dcoc_ C: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)           SCOP domains
               CATH domains 1dcoC00 C:6-104  [code=3.30.1360.20, no name defined]                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhhhh.....eeee...eeeeee..hhh....hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: C:6-45 UniProt: 2-45     Exon 1.4  PDB: C:46-72     Exon 1.5  PDB: C:73-104          Transcript 1
                 1dco C   6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
                                    15        25        35        45        55        65        75        85        95         

Chain D from PDB  Type:PROTEIN  Length:99
 aligned with PHS_RAT | P61459 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:99
                                    15        25        35        45        55        65        75        85        95         
              PHS_RAT     6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
               SCOP domains d1dcod_ D: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)           SCOP domains
               CATH domains 1dcoD00 D:6-104  [code=3.30.1360.20, no name defined]                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhhhhh....eeee...eeeeee.........hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: D:6-45 UniProt: 2-45     Exon 1.4  PDB: D:46-72     Exon 1.5  PDB: D:73-104          Transcript 1
                 1dco D   6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
                                    15        25        35        45        55        65        75        85        95         

Chain E from PDB  Type:PROTEIN  Length:99
 aligned with PHS_RAT | P61459 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:99
                                    15        25        35        45        55        65        75        85        95         
              PHS_RAT     6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
               SCOP domains d1dcoe_ E: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)           SCOP domains
               CATH domains 1dcoE00 E:6-104  [code=3.30.1360.20, no name defined]                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh...........eeeeee...hhhhhhhhhhhhhhhhhh....eeee...eeeeee.........hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: E:6-45 UniProt: 2-45     Exon 1.4  PDB: E:46-72     Exon 1.5  PDB: E:73-104          Transcript 1
                 1dco E   6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
                                    15        25        35        45        55        65        75        85        95         

Chain F from PDB  Type:PROTEIN  Length:99
 aligned with PHS_RAT | P61459 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:99
                                    15        25        35        45        55        65        75        85        95         
              PHS_RAT     6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
               SCOP domains d1dcof_ F: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)           SCOP domains
               CATH domains 1dcoF00 F:6-104  [code=3.30.1360.20, no name defined]                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhhhhh....eeee...eeeeee.........hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: F:6-45 UniProt: 2-45     Exon 1.4  PDB: F:46-72     Exon 1.5  PDB: F:73-104          Transcript 1
                 1dco F   6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
                                    15        25        35        45        55        65        75        85        95         

Chain G from PDB  Type:PROTEIN  Length:99
 aligned with PHS_RAT | P61459 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:99
                                    15        25        35        45        55        65        75        85        95         
              PHS_RAT     6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
               SCOP domains d1dcog_ G: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)           SCOP domains
               CATH domains 1dcoG00 G:6-104  [code=3.30.1360.20, no name defined]                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh..eee....eeeeeee...hhhhhhhhhhhhhhhhhh....eeee...eeeeee.........hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: G:6-45 UniProt: 2-45     Exon 1.4  PDB: G:46-72     Exon 1.5  PDB: G:73-104          Transcript 1
                 1dco G   6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
                                    15        25        35        45        55        65        75        85        95         

Chain H from PDB  Type:PROTEIN  Length:99
 aligned with PHS_RAT | P61459 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:99
                                    15        25        35        45        55        65        75        85        95         
              PHS_RAT     6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
               SCOP domains d1dcoh_ H: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)           SCOP domains
               CATH domains 1dcoH00 H:6-104  [code=3.30.1360.20, no name defined]                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhhhhh....eeee...eeeeee.........hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3  PDB: H:6-45 UniProt: 2-45     Exon 1.4  PDB: H:46-72     Exon 1.5  PDB: H:73-104          Transcript 1
                 1dco H   6 HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT 104
                                    15        25        35        45        55        65        75        85        95         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DCO)

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (PHS_RAT | P61459)
molecular function
    GO:0008124    4-alpha-hydroxytetrahydrobiopterin dehydratase activity    Catalysis of the reaction: (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7,8-tetrahydro-4a-hydroxypterin = (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7,8-dihydro-6H-pterin + H(2)O.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
    GO:0004505    phenylalanine 4-monooxygenase activity    Catalysis of the reaction: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + 4-alpha-hydroxytetrahydrobiopterin.
    GO:0003713    transcription coactivator activity    Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.
biological process
    GO:0006558    L-phenylalanine metabolic process    The chemical reactions and pathways involving L-phenylalanine, the L-enantiomer of 2-amino-3-phenylpropanoic acid, i.e. (2S)-2-amino-3-phenylpropanoic acid.
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0051291    protein heterooligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers that are not all identical. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
    GO:0051289    protein homotetramerization    The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
    GO:0043496    regulation of protein homodimerization activity    Any process that modulates the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006729    tetrahydrobiopterin biosynthetic process    The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        PHS_RAT | P614591dch 1dcp 1f93 3hxa

(-) Related Entries Specified in the PDB File

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