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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   DIENOYL-COA ISOMERASE

Authors :   Y. Modis, S. A. Filppula, D. Novikov, B. Norledge, J. K. Hiltunen, R. K. W

Date :   13 Feb 98 (Deposition) - 30 Mar 99 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (2x)

Keywords :   Lyase, Dienoyl-Coa Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Modis, S. A. Filppula, D. K. Novikov, B. Norledge, J. K. Hiltunen, R. K. Wierenga
The Crystal Structure Of Dienoyl-Coa Isomerase At 1. 5 A Resolution Reveals The Importance Of Aspartate And Glutamat Sidechains For Catalysis.
Structure V. 6 957 1998
PubMed-ID: 9739087 | Reference-DOI: 10.1016/S0969-2126(98)00098-7

Molecule 1 - DIENOYL-COA ISOMERASE
	Cellular Location	:	PEROXISOME, MITOCHONDRIA
	Cell Line	:	BL21
	Chains	:	A, B, C
	EC Number	:	4.2.1.17
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cellular Location	:	CYTOPLASM
	Expression System Plasmid	:	PET3A (NOVAGEN)
	Expression System Strain	:	BL21 (DE3) LYSS
	Expression System Taxid	:	562
	Organ	:	LIVER
	Organelle	:	PEROXISOME, MITOCHONDRIA
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Strain	:	WISTAR
	Synonym	:	DELTA3,5,DELTA2,4-DIENOYL-COENZYME A ISOMERASE, PROBABLE PEROXISOMAL ENOYL-COA HYDRATASE

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 19)

No.	Name	Count	Type	Full Name
1	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
2	MG	4	Ligand/Ion	MAGNESIUM ION
3	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 30)

No.	Name	Count	Type	Full Name
1	EDO	14	Ligand/Ion	1,2-ETHANEDIOL
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	SO4	16	Ligand/Ion	SULFATE ION

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:216 , HOH A:336 , HOH A:337 , HOH A:348 , HOH A:358 , HOH A:376 , HOH A:438 , HOH A:462 , GLY B:216 , HOH B:356 , GLY C:216 , HOH C:425	BINDING SITE FOR RESIDUE SO4 A 8
02	AC2	SOFTWARE	ARG A:82 , ARG A:86 , HOH A:328 , HOH A:450 , HOH A:528 , HOH A:623 , HOH A:644 , ARG B:73 , HOH B:470	BINDING SITE FOR RESIDUE SO4 A 9
03	AC3	SOFTWARE	LYS B:111 , HOH B:458 , HOH B:595 , SER C:99 , LYS C:326	BINDING SITE FOR RESIDUE SO4 B 10
04	AC4	SOFTWARE	LYS C:308 , ILE C:322 , THR C:323 , HOH C:400 , HOH C:500 , HOH C:577 , HOH C:653 , HOH C:657	BINDING SITE FOR RESIDUE SO4 C 11
05	AC5	SOFTWARE	GLN B:193 , LYS B:195 , HOH B:417 , HOH B:604	BINDING SITE FOR RESIDUE SO4 B 12
06	AC6	SOFTWARE	GLN C:193 , LYS C:195 , HOH C:412 , HOH C:611	BINDING SITE FOR RESIDUE SO4 C 13
07	AC7	SOFTWARE	GLN A:193 , LYS A:195 , LYS A:230 , HOH A:432	BINDING SITE FOR RESIDUE SO4 A 14
08	AC8	SOFTWARE	ARG A:73 , LYS A:76 , HOH A:641 , HOH A:642 , ARG B:82 , HOH B:644	BINDING SITE FOR RESIDUE SO4 B 15
09	AC9	SOFTWARE	HOH A:639 , HOH A:640 , HOH A:641 , HOH A:642 , HOH A:643 , HOH A:644	BINDING SITE FOR RESIDUE MG A 17
10	BC1	SOFTWARE	HOH C:645 , HOH C:646 , HOH C:647 , HOH C:649	BINDING SITE FOR RESIDUE MG C 18
11	BC2	SOFTWARE	HOH A:645 , HOH A:646 , HOH B:649 , HOH B:650 , HOH C:651 , HOH C:652	BINDING SITE FOR RESIDUE MG A 19
12	BC3	SOFTWARE	HOH C:653 , HOH C:654 , HOH C:655 , HOH C:656 , HOH C:657 , HOH C:658	BINDING SITE FOR RESIDUE MG C 20
13	BC4	SOFTWARE	ILE A:126 , ASP A:204 , VAL A:205 , HOH A:557 , LEU B:301	BINDING SITE FOR RESIDUE EDO A 1
14	BC5	SOFTWARE	ASP B:204 , VAL B:205 , HOH B:400 , HOH B:428 , LEU C:301	BINDING SITE FOR RESIDUE EDO B 2
15	BC6	SOFTWARE	LEU A:301 , ILE C:126 , ASP C:204 , VAL C:205 , HOH C:411 , HOH C:495	BINDING SITE FOR RESIDUE EDO C 3
16	BC7	SOFTWARE	ARG A:218 , ASN A:222 , ASP B:182 , LEU B:278 , ILE B:279	BINDING SITE FOR RESIDUE EDO A 4
17	BC8	SOFTWARE	ARG B:218 , ASN B:222 , ASP C:182 , LEU C:278 , ILE C:279 , HOH C:596	BINDING SITE FOR RESIDUE EDO B 5
18	BC9	SOFTWARE	ASP A:182 , LEU A:278 , ILE A:279 , ARG C:218 , ASN C:222	BINDING SITE FOR RESIDUE EDO C 6
19	CA1	UNKNOWN	GLU A:196 , ASP A:204	GLU 196 ACCEPTS A PROTON AND ASP 204 DONATES A PROTON DURING CATALYSIS OF THE FORWARD REACTION.
20	CA2	UNKNOWN	GLU B:196 , ASP B:204	GLU 196 ACCEPTS A PROTON AND ASP 204 DONATES A PROTON DURING CATALYSIS OF THE FORWARD REACTION.
21	CA3	UNKNOWN	GLU C:196 , ASP C:204	GLU 196 ACCEPTS A PROTON AND ASP 204 DONATES A PROTON DURING CATALYSIS OF THE FORWARD REACTION.
22	CC1	SOFTWARE	LEU A:327 , TRP C:139 , TYR C:140 , HOH C:436 , HOH C:531	BINDING SITE FOR RESIDUE EDO C 7

(no "SS Bond" information available for 1DCI)

(no "Cis Peptide Bond" information available for 1DCI)

(no "SAP(SNP)/Variant" information available for 1DCI)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ENOYL_COA_HYDRATASE	PS00166	Enoyl-CoA hydratase/isomerase signature.	ECH1_RAT	163-183	3	A:163-183 B:163-183 C:163-183

Biological Unit 1 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ENOYL_COA_HYDRATASE	PS00166	Enoyl-CoA hydratase/isomerase signature.	ECH1_RAT	163-183	6	A:163-183 B:163-183 C:163-183

Asymmetric Unit (9, 27)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000027537	1	ENSRNOE00000197137	chr1:83932718-83932781	64	ECH1_RAT	1-18	18	0	-	-
1.2	ENSRNOT00000027537	2	ENSRNOE00000197167	chr1:83933302-83933506	205	ECH1_RAT	18-86	69	3	A:53-86 B:53-86 C:53-86	34 34 34
1.3	ENSRNOT00000027537	3	ENSRNOE00000197181	chr1:83933611-83933699	89	ECH1_RAT	86-116	31	3	A:86-116 B:86-116 C:86-116	31 31 31
1.4	ENSRNOT00000027537	4	ENSRNOE00000197196	chr1:83936487-83936611	125	ECH1_RAT	116-157	42	3	A:116-157 B:116-157 C:116-157	42 42 42
1.5	ENSRNOT00000027537	5	ENSRNOE00000197211	chr1:83936694-83936742	49	ECH1_RAT	158-174	17	3	A:158-174 B:158-174 C:158-174	17 17 17
1.6	ENSRNOT00000027537	6	ENSRNOE00000197236	chr1:83936934-83936998	65	ECH1_RAT	174-195	22	3	A:174-195 B:174-195 C:174-195	22 22 22
1.7	ENSRNOT00000027537	7	ENSRNOE00000197257	chr1:83937943-83938013	71	ECH1_RAT	196-219	24	3	A:196-219 B:196-219 C:196-219	24 24 24
1.8	ENSRNOT00000027537	8	ENSRNOE00000197283	chr1:83938105-83938176	72	ECH1_RAT	219-243	25	3	A:219-243 B:219-243 C:219-243	25 25 25
1.9	ENSRNOT00000027537	9	ENSRNOE00000197307	chr1:83938412-83938562	151	ECH1_RAT	243-293	51	3	A:243-293 B:243-293 C:243-293	51 51 51
1.10	ENSRNOT00000027537	10	ENSRNOE00000197331	chr1:83938711-83938925	215	ECH1_RAT	294-327	34	3	A:294-327 B:294-327 C:294-327	34 34 34

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:275
 aligned with ECH1_RAT | Q62651 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:275
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322     
             ECH1_RAT    53 NYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFSKL 327
               SCOP domains d1dcia_ A: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)                                                                                                                                                                                                                SCOP domains
               CATH domains 1dciA01 A:53-264 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                           1dciA02 A:265-327                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee..eeeeee..hhh.....hhhhhhhhhhhhhhhh.....eeeeee..........hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeehhhhhhhhh..eeeee...eee.hhhhh.......hhhhhhh....hhhhhhhhhh..eeehhhhhhh....eee..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhh....hhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:53-86            -----------------------------Exon 1.4  PDB: A:116-157 UniProt: 116-157 Exon 1.5         ---------------------Exon 1.7  PDB: A:196-219-----------------------Exon 1.9  PDB: A:243-293 UniProt: 243-293          Exon 1.10  PDB: A:294-327          Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.3  PDB: A:86-116        ---------------------------------------------------------Exon 1.6              -----------------------Exon 1.8  PDB: A:219-243 ------------------------------------------------------------------------------------ Transcript 1 (2)
                 1dci A  53 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFSKL 327
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322

Chain B from PDB  Type:PROTEIN  Length:275
 aligned with ECH1_RAT | Q62651 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:275
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322     
             ECH1_RAT    53 NYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFSKL 327
               SCOP domains d1dcib_ B: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)                                                                                                                                                                                                                SCOP domains
               CATH domains 1dciB01 B:53-264 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                           1dciB02 B:265-327                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee..eeeeee..hhh.....hhhhhhhhhhhhhhhh.....eeeeee..........hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeehhhhhhhhh..eeeee...eee.hhhhh.......hhhhhhh....hhhhhhhhhh..eeehhhhhhh....eee..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhh...hhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.2  PDB: B:53-86            -----------------------------Exon 1.4  PDB: B:116-157 UniProt: 116-157 Exon 1.5         ---------------------Exon 1.7  PDB: B:196-219-----------------------Exon 1.9  PDB: B:243-293 UniProt: 243-293          Exon 1.10  PDB: B:294-327          Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.3  PDB: B:86-116        ---------------------------------------------------------Exon 1.6              -----------------------Exon 1.8  PDB: B:219-243 ------------------------------------------------------------------------------------ Transcript 1 (2)
                 1dci B  53 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFSKL 327
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322

Chain C from PDB  Type:PROTEIN  Length:275
 aligned with ECH1_RAT | Q62651 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:275
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322     
             ECH1_RAT    53 NYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFSKL 327
               SCOP domains d1dcic_ C: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)                                                                                                                                                                                                                SCOP domains
               CATH domains 1dciC01 C:53-264 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                           1dciC02 C:265-327                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee..eeeeee..hhh.....hhhhhhhhhhhhhhhh.....eeeeee..........hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeehhhhhhhhh..eeeee...eee.hhhhh.......hhhhhhh....hhhhhhhhhh..eeehhhhhhh....eee..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhh...hhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.2  PDB: C:53-86            -----------------------------Exon 1.4  PDB: C:116-157 UniProt: 116-157 Exon 1.5         ---------------------Exon 1.7  PDB: C:196-219-----------------------Exon 1.9  PDB: C:243-293 UniProt: 243-293          Exon 1.10  PDB: C:294-327          Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.3  PDB: C:86-116        ---------------------------------------------------------Exon 1.6              -----------------------Exon 1.8  PDB: C:219-243 ------------------------------------------------------------------------------------ Transcript 1 (2)
                 1dci C  53 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFSKL 327
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

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Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: ClpP/crotonase (207)

Superfamily: ClpP/crotonase (207)

Family: Crotonase-like (39)

Protein domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) (8)

Norway rat (Rattus norvegicus) [TaxId: 10116] (1)

1a	d1dcia_	A:
1b	d1dcib_	B:
1c	d1dcic_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: 2-enoyl-CoA Hydratase; Chain A, domain 1 (89)

Homologous Superfamily: 2-enoyl-CoA Hydratase; Chain A, domain 1 (89)

Norway rat (Rattus norvegicus) (6)

1a	1dciA01	A:53-264
1b	1dciB01	B:53-264
1c	1dciC01	C:53-264

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 (25)

Homologous Superfamily: Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 (25)

Norway rat (Rattus norvegicus) (5)

2a	1dciA02	A:265-327
2b	1dciB02	B:265-327
2c	1dciC02	C:265-327

(no "Pfam Domain" information available for 1DCI)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (ECH1_RAT | Q62651)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
	GO:0006635	fatty acid beta-oxidation	A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

Asymmetric Unit
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	Cis Peptide Bonds
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	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	1dci
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	4.2.1.17
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(no "Entries Sharing at Least One Protein Chain" available for 1DCI)

(no "Related Entries Specified in the PDB File" available for 1DCI)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 19)

Sites (22, 22)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Exons (9, 27)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (2, 6)

Pfam Domains (0, 0)

Gene Ontology (11, 11)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File