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1DCI
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (301 KB)
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(1)
Title
:
DIENOYL-COA ISOMERASE
Authors
:
Y. Modis, S. A. Filppula, D. Novikov, B. Norledge, J. K. Hiltunen, R. K. W
Date
:
13 Feb 98 (Deposition) - 30 Mar 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Lyase, Dienoyl-Coa Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Modis, S. A. Filppula, D. K. Novikov, B. Norledge, J. K. Hiltunen, R. K. Wierenga
The Crystal Structure Of Dienoyl-Coa Isomerase At 1. 5 A Resolution Reveals The Importance Of Aspartate And Glutamat Sidechains For Catalysis.
Structure V. 6 957 1998
[
close entry info
]
Hetero Components
(3, 19)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CA1 (UNKNOWN)
20: CA2 (UNKNOWN)
21: CA3 (UNKNOWN)
22: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:216 , HOH A:336 , HOH A:337 , HOH A:348 , HOH A:358 , HOH A:376 , HOH A:438 , HOH A:462 , GLY B:216 , HOH B:356 , GLY C:216 , HOH C:425
BINDING SITE FOR RESIDUE SO4 A 8
02
AC2
SOFTWARE
ARG A:82 , ARG A:86 , HOH A:328 , HOH A:450 , HOH A:528 , HOH A:623 , HOH A:644 , ARG B:73 , HOH B:470
BINDING SITE FOR RESIDUE SO4 A 9
03
AC3
SOFTWARE
LYS B:111 , HOH B:458 , HOH B:595 , SER C:99 , LYS C:326
BINDING SITE FOR RESIDUE SO4 B 10
04
AC4
SOFTWARE
LYS C:308 , ILE C:322 , THR C:323 , HOH C:400 , HOH C:500 , HOH C:577 , HOH C:653 , HOH C:657
BINDING SITE FOR RESIDUE SO4 C 11
05
AC5
SOFTWARE
GLN B:193 , LYS B:195 , HOH B:417 , HOH B:604
BINDING SITE FOR RESIDUE SO4 B 12
06
AC6
SOFTWARE
GLN C:193 , LYS C:195 , HOH C:412 , HOH C:611
BINDING SITE FOR RESIDUE SO4 C 13
07
AC7
SOFTWARE
GLN A:193 , LYS A:195 , LYS A:230 , HOH A:432
BINDING SITE FOR RESIDUE SO4 A 14
08
AC8
SOFTWARE
ARG A:73 , LYS A:76 , HOH A:641 , HOH A:642 , ARG B:82 , HOH B:644
BINDING SITE FOR RESIDUE SO4 B 15
09
AC9
SOFTWARE
HOH A:639 , HOH A:640 , HOH A:641 , HOH A:642 , HOH A:643 , HOH A:644
BINDING SITE FOR RESIDUE MG A 17
10
BC1
SOFTWARE
HOH C:645 , HOH C:646 , HOH C:647 , HOH C:649
BINDING SITE FOR RESIDUE MG C 18
11
BC2
SOFTWARE
HOH A:645 , HOH A:646 , HOH B:649 , HOH B:650 , HOH C:651 , HOH C:652
BINDING SITE FOR RESIDUE MG A 19
12
BC3
SOFTWARE
HOH C:653 , HOH C:654 , HOH C:655 , HOH C:656 , HOH C:657 , HOH C:658
BINDING SITE FOR RESIDUE MG C 20
13
BC4
SOFTWARE
ILE A:126 , ASP A:204 , VAL A:205 , HOH A:557 , LEU B:301
BINDING SITE FOR RESIDUE EDO A 1
14
BC5
SOFTWARE
ASP B:204 , VAL B:205 , HOH B:400 , HOH B:428 , LEU C:301
BINDING SITE FOR RESIDUE EDO B 2
15
BC6
SOFTWARE
LEU A:301 , ILE C:126 , ASP C:204 , VAL C:205 , HOH C:411 , HOH C:495
BINDING SITE FOR RESIDUE EDO C 3
16
BC7
SOFTWARE
ARG A:218 , ASN A:222 , ASP B:182 , LEU B:278 , ILE B:279
BINDING SITE FOR RESIDUE EDO A 4
17
BC8
SOFTWARE
ARG B:218 , ASN B:222 , ASP C:182 , LEU C:278 , ILE C:279 , HOH C:596
BINDING SITE FOR RESIDUE EDO B 5
18
BC9
SOFTWARE
ASP A:182 , LEU A:278 , ILE A:279 , ARG C:218 , ASN C:222
BINDING SITE FOR RESIDUE EDO C 6
19
CA1
UNKNOWN
GLU A:196 , ASP A:204
GLU 196 ACCEPTS A PROTON AND ASP 204 DONATES A PROTON DURING CATALYSIS OF THE FORWARD REACTION.
20
CA2
UNKNOWN
GLU B:196 , ASP B:204
GLU 196 ACCEPTS A PROTON AND ASP 204 DONATES A PROTON DURING CATALYSIS OF THE FORWARD REACTION.
21
CA3
UNKNOWN
GLU C:196 , ASP C:204
GLU 196 ACCEPTS A PROTON AND ASP 204 DONATES A PROTON DURING CATALYSIS OF THE FORWARD REACTION.
22
CC1
SOFTWARE
LEU A:327 , TRP C:139 , TYR C:140 , HOH C:436 , HOH C:531
BINDING SITE FOR RESIDUE EDO C 7
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ENOYL_COA_HYDRATASE (A:163-183,B:163-183,C:163-183)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOYL_COA_HYDRATASE
PS00166
Enoyl-CoA hydratase/isomerase signature.
ECH1_RAT
163-183
3
A:163-183
B:163-183
C:163-183
[
close PROSITE info
]
Exons
(9, 27)
Info
All Exons
Exon 1.2 (A:53-86 | B:53-86 | C:53-86)
Exon 1.3 (A:86-116 | B:86-116 | C:86-116)
Exon 1.4 (A:116-157 | B:116-157 | C:116-157)
Exon 1.5 (A:158-174 | B:158-174 | C:158-174)
Exon 1.6 (A:174-195 | B:174-195 | C:174-195)
Exon 1.7 (A:196-219 | B:196-219 | C:196-219)
Exon 1.8 (A:219-243 | B:219-243 | C:219-243)
Exon 1.9 (A:243-293 | B:243-293 | C:243-293)
Exon 1.10 (A:294-327 | B:294-327 | C:294-327)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000027537
1
ENSRNOE00000197137
chr1:
83932718-83932781
64
ECH1_RAT
1-18
18
0
-
-
1.2
ENSRNOT00000027537
2
ENSRNOE00000197167
chr1:
83933302-83933506
205
ECH1_RAT
18-86
69
3
A:53-86
B:53-86
C:53-86
34
34
34
1.3
ENSRNOT00000027537
3
ENSRNOE00000197181
chr1:
83933611-83933699
89
ECH1_RAT
86-116
31
3
A:86-116
B:86-116
C:86-116
31
31
31
1.4
ENSRNOT00000027537
4
ENSRNOE00000197196
chr1:
83936487-83936611
125
ECH1_RAT
116-157
42
3
A:116-157
B:116-157
C:116-157
42
42
42
1.5
ENSRNOT00000027537
5
ENSRNOE00000197211
chr1:
83936694-83936742
49
ECH1_RAT
158-174
17
3
A:158-174
B:158-174
C:158-174
17
17
17
1.6
ENSRNOT00000027537
6
ENSRNOE00000197236
chr1:
83936934-83936998
65
ECH1_RAT
174-195
22
3
A:174-195
B:174-195
C:174-195
22
22
22
1.7
ENSRNOT00000027537
7
ENSRNOE00000197257
chr1:
83937943-83938013
71
ECH1_RAT
196-219
24
3
A:196-219
B:196-219
C:196-219
24
24
24
1.8
ENSRNOT00000027537
8
ENSRNOE00000197283
chr1:
83938105-83938176
72
ECH1_RAT
219-243
25
3
A:219-243
B:219-243
C:219-243
25
25
25
1.9
ENSRNOT00000027537
9
ENSRNOE00000197307
chr1:
83938412-83938562
151
ECH1_RAT
243-293
51
3
A:243-293
B:243-293
C:243-293
51
51
51
1.10
ENSRNOT00000027537
10
ENSRNOE00000197331
chr1:
83938711-83938925
215
ECH1_RAT
294-327
34
3
A:294-327
B:294-327
C:294-327
34
34
34
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1dcia_ (A:)
1b: SCOP_d1dcib_ (B:)
1c: SCOP_d1dcic_ (C:)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Crotonase-like
(39)
Protein domain
:
Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
(8)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1dcia_
A:
1b
d1dcib_
B:
1c
d1dcic_
C:
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1dciA01 (A:53-264)
1b: CATH_1dciB01 (B:53-264)
1c: CATH_1dciC01 (C:53-264)
2a: CATH_1dciA02 (A:265-327)
2b: CATH_1dciB02 (B:265-327)
2c: CATH_1dciC02 (C:265-327)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Norway rat (Rattus norvegicus)
(6)
1a
1dciA01
A:53-264
1b
1dciB01
B:53-264
1c
1dciC01
C:53-264
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lyase 2-enoyl-coa Hydratase; Chain A, domain 2
(25)
Homologous Superfamily
:
Lyase 2-enoyl-coa Hydratase, Chain A, domain 2
(25)
Norway rat (Rattus norvegicus)
(5)
2a
1dciA02
A:265-327
2b
1dciB02
B:265-327
2c
1dciC02
C:265-327
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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