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1DCI
Biol. Unit 1
Info
Asym.Unit (159 KB)
Biol.Unit 1 (301 KB)
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(1)
Title
:
DIENOYL-COA ISOMERASE
Authors
:
Y. Modis, S. A. Filppula, D. Novikov, B. Norledge, J. K. Hiltunen, R. K. W
Date
:
13 Feb 98 (Deposition) - 30 Mar 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Lyase, Dienoyl-Coa Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Modis, S. A. Filppula, D. K. Novikov, B. Norledge, J. K. Hiltunen, R. K. Wierenga
The Crystal Structure Of Dienoyl-Coa Isomerase At 1. 5 A Resolution Reveals The Importance Of Aspartate And Glutamat Sidechains For Catalysis.
Structure V. 6 957 1998
[
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Hetero Components
(2, 30)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SO4
16
Ligand/Ion
SULFATE ION
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CA1 (UNKNOWN)
20: CA2 (UNKNOWN)
21: CA3 (UNKNOWN)
22: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:216 , HOH A:336 , HOH A:337 , HOH A:348 , HOH A:358 , HOH A:376 , HOH A:438 , HOH A:462 , GLY B:216 , HOH B:356 , GLY C:216 , HOH C:425
BINDING SITE FOR RESIDUE SO4 A 8
02
AC2
SOFTWARE
ARG A:82 , ARG A:86 , HOH A:328 , HOH A:450 , HOH A:528 , HOH A:623 , HOH A:644 , ARG B:73 , HOH B:470
BINDING SITE FOR RESIDUE SO4 A 9
03
AC3
SOFTWARE
LYS B:111 , HOH B:458 , HOH B:595 , SER C:99 , LYS C:326
BINDING SITE FOR RESIDUE SO4 B 10
04
AC4
SOFTWARE
LYS C:308 , ILE C:322 , THR C:323 , HOH C:400 , HOH C:500 , HOH C:577 , HOH C:653 , HOH C:657
BINDING SITE FOR RESIDUE SO4 C 11
05
AC5
SOFTWARE
GLN B:193 , LYS B:195 , HOH B:417 , HOH B:604
BINDING SITE FOR RESIDUE SO4 B 12
06
AC6
SOFTWARE
GLN C:193 , LYS C:195 , HOH C:412 , HOH C:611
BINDING SITE FOR RESIDUE SO4 C 13
07
AC7
SOFTWARE
GLN A:193 , LYS A:195 , LYS A:230 , HOH A:432
BINDING SITE FOR RESIDUE SO4 A 14
08
AC8
SOFTWARE
ARG A:73 , LYS A:76 , HOH A:641 , HOH A:642 , ARG B:82 , HOH B:644
BINDING SITE FOR RESIDUE SO4 B 15
09
AC9
SOFTWARE
HOH A:639 , HOH A:640 , HOH A:641 , HOH A:642 , HOH A:643 , HOH A:644
BINDING SITE FOR RESIDUE MG A 17
10
BC1
SOFTWARE
HOH C:645 , HOH C:646 , HOH C:647 , HOH C:649
BINDING SITE FOR RESIDUE MG C 18
11
BC2
SOFTWARE
HOH A:645 , HOH A:646 , HOH B:649 , HOH B:650 , HOH C:651 , HOH C:652
BINDING SITE FOR RESIDUE MG A 19
12
BC3
SOFTWARE
HOH C:653 , HOH C:654 , HOH C:655 , HOH C:656 , HOH C:657 , HOH C:658
BINDING SITE FOR RESIDUE MG C 20
13
BC4
SOFTWARE
ILE A:126 , ASP A:204 , VAL A:205 , HOH A:557 , LEU B:301
BINDING SITE FOR RESIDUE EDO A 1
14
BC5
SOFTWARE
ASP B:204 , VAL B:205 , HOH B:400 , HOH B:428 , LEU C:301
BINDING SITE FOR RESIDUE EDO B 2
15
BC6
SOFTWARE
LEU A:301 , ILE C:126 , ASP C:204 , VAL C:205 , HOH C:411 , HOH C:495
BINDING SITE FOR RESIDUE EDO C 3
16
BC7
SOFTWARE
ARG A:218 , ASN A:222 , ASP B:182 , LEU B:278 , ILE B:279
BINDING SITE FOR RESIDUE EDO A 4
17
BC8
SOFTWARE
ARG B:218 , ASN B:222 , ASP C:182 , LEU C:278 , ILE C:279 , HOH C:596
BINDING SITE FOR RESIDUE EDO B 5
18
BC9
SOFTWARE
ASP A:182 , LEU A:278 , ILE A:279 , ARG C:218 , ASN C:222
BINDING SITE FOR RESIDUE EDO C 6
19
CA1
UNKNOWN
GLU A:196 , ASP A:204
GLU 196 ACCEPTS A PROTON AND ASP 204 DONATES A PROTON DURING CATALYSIS OF THE FORWARD REACTION.
20
CA2
UNKNOWN
GLU B:196 , ASP B:204
GLU 196 ACCEPTS A PROTON AND ASP 204 DONATES A PROTON DURING CATALYSIS OF THE FORWARD REACTION.
21
CA3
UNKNOWN
GLU C:196 , ASP C:204
GLU 196 ACCEPTS A PROTON AND ASP 204 DONATES A PROTON DURING CATALYSIS OF THE FORWARD REACTION.
22
CC1
SOFTWARE
LEU A:327 , TRP C:139 , TYR C:140 , HOH C:436 , HOH C:531
BINDING SITE FOR RESIDUE EDO C 7
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: ENOYL_COA_HYDRATASE (A:163-183,B:163-183,C:163-183)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOYL_COA_HYDRATASE
PS00166
Enoyl-CoA hydratase/isomerase signature.
ECH1_RAT
163-183
6
A:163-183
B:163-183
C:163-183
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1dcia_ (A:)
1b: SCOP_d1dcib_ (B:)
1c: SCOP_d1dcic_ (C:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Crotonase-like
(39)
Protein domain
:
Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
(8)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1dcia_
A:
1b
d1dcib_
B:
1c
d1dcic_
C:
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1dciA01 (A:53-264)
1b: CATH_1dciB01 (B:53-264)
1c: CATH_1dciC01 (C:53-264)
2a: CATH_1dciA02 (A:265-327)
2b: CATH_1dciB02 (B:265-327)
2c: CATH_1dciC02 (C:265-327)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Norway rat (Rattus norvegicus)
(6)
1a
1dciA01
A:53-264
1b
1dciB01
B:53-264
1c
1dciC01
C:53-264
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lyase 2-enoyl-coa Hydratase; Chain A, domain 2
(25)
Homologous Superfamily
:
Lyase 2-enoyl-coa Hydratase, Chain A, domain 2
(25)
Norway rat (Rattus norvegicus)
(5)
2a
1dciA02
A:265-327
2b
1dciB02
B:265-327
2c
1dciC02
C:265-327
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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