1D7X - JenaLib

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:201 , HIS A:205 , HIS A:211 , SPC A:401	BINDING SITE FOR RESIDUE ZN A 301
02	AC2	SOFTWARE	HIS A:151 , ASP A:153 , HIS A:166 , HIS A:179	BINDING SITE FOR RESIDUE ZN A 302
03	AC3	SOFTWARE	ASP A:158 , GLY A:159 , GLY A:161 , VAL A:163 , ASP A:181 , GLU A:184	BINDING SITE FOR RESIDUE CA A 303
04	AC4	SOFTWARE	ASP A:107 , ASP A:182 , GLU A:184 , HOH A:403 , HOH A:496	BINDING SITE FOR RESIDUE CA A 304
05	AC5	SOFTWARE	ASP A:141 , GLY A:173 , ASN A:175 , ASP A:177 , HOH A:470 , HOH A:473	BINDING SITE FOR RESIDUE CA A 305
06	AC6	SOFTWARE	HIS B:701 , HIS B:705 , HIS B:711 , SPC B:901	BINDING SITE FOR RESIDUE ZN B 801
07	AC7	SOFTWARE	HIS B:651 , ASP B:653 , HIS B:666 , HIS B:679	BINDING SITE FOR RESIDUE ZN B 802
08	AC8	SOFTWARE	ASP B:658 , GLY B:659 , GLY B:661 , VAL B:663 , ASP B:681 , GLU B:684	BINDING SITE FOR RESIDUE CA B 803
09	AC9	SOFTWARE	HOH A:440 , HOH B:14 , ASP B:607 , ASP B:682 , GLU B:684	BINDING SITE FOR RESIDUE CA B 804
10	BC1	SOFTWARE	HOH B:6 , ASP B:641 , GLY B:673 , ASN B:675 , ASP B:677	BINDING SITE FOR RESIDUE CA B 805
11	BC2	SOFTWARE	ASN A:162 , VAL A:163 , LEU A:164 , ALA A:165 , HIS A:201 , GLU A:202 , HIS A:205 , HIS A:211 , LEU A:222 , TYR A:223 , ZN A:301 , HOH A:488 , HOH B:102 , GLN B:736 , THR B:755	BINDING SITE FOR RESIDUE SPC A 401
12	BC3	SOFTWARE	HOH B:48 , VAL B:663 , LEU B:664 , ALA B:665 , HIS B:701 , GLU B:702 , HIS B:705 , HIS B:711 , PRO B:721 , LEU B:722 , TYR B:723 , ZN B:801	BINDING SITE FOR RESIDUE SPC B 901

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (5, 10)

Asymmetric/Biological Unit (5, 10)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000299855	1a	ENSE00002171374	chr11:102714534-102714173	362	MMP3_HUMAN	1-35	35	0	-	-
1.2	ENST00000299855	2	ENSE00001105428	chr11:102713647-102713403	245	MMP3_HUMAN	36-117	82	2	A:83-100 B:583-600	18 18
1.3	ENST00000299855	3	ENSE00001642002	chr11:102713310-102713162	149	MMP3_HUMAN	117-167	51	2	A:100-150 B:600-650	51 51
1.4b	ENST00000299855	4b	ENSE00001105420	chr11:102713010-102712885	126	MMP3_HUMAN	167-209	43	2	A:150-192 B:650-692	43 43
1.5	ENST00000299855	5	ENSE00001657829	chr11:102711324-102711160	165	MMP3_HUMAN	209-264	56	2	A:192-247 B:692-747	56 56
1.6	ENST00000299855	6	ENSE00001105427	chr11:102710983-102710839	145	MMP3_HUMAN	264-312	49	2	A:247-251 B:747-755	5 9
1.7	ENST00000299855	7	ENSE00001105439	chr11:102709974-102709841	134	MMP3_HUMAN	312-357	46	0	-	-
1.8	ENST00000299855	8	ENSE00001801971	chr11:102709441-102709282	160	MMP3_HUMAN	357-410	54	0	-	-
1.9	ENST00000299855	9	ENSE00001105448	chr11:102708132-102708029	104	MMP3_HUMAN	410-445	36	0	-	-
1.11	ENST00000299855	11	ENSE00001292630	chr11:102706957-102706532	426	MMP3_HUMAN	445-477	33	0	-	-

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:169
 aligned with MMP3_HUMAN | P08254 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:169
                                   109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259         
           MMP3_HUMAN   100 FRTFPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPD 268
               SCOP domains d1d7xa_ A: Stromelysin-1 (MMP-3)                                                                                                                                          SCOP domains
               CATH domains 1d7xA00 A:83-251 Collagenase (Catalytic Domain)                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee....ee.....eehhhhhhhhhhhhh...........................hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------ZINC_PROTE-------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2          -------------------------------------------------Exon 1.4b  PDB: A:150-192 UniProt: 167-209 ------------------------------------------------------1.6   Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.3  PDB: A:100-150 UniProt: 117-167          -----------------------------------------Exon 1.5  PDB: A:192-247 UniProt: 209-264               ---- Transcript 1 (2)
                 1d7x A  83 FRTFPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPD 251
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain B from PDB  Type:PROTEIN  Length:173
 aligned with MMP3_HUMAN | P08254 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:173
                                   109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269   
           MMP3_HUMAN   100 FRTFPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPDSPET 272
               SCOP domains d1d7xb_ B: Stromelysin-1 (MMP-3)                                                                                                                                              SCOP domains
               CATH domains 1d7xB00 B:583-755 Collagenase (Catalytic Domain)                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..........eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee....ee.....eehhhhhhhhhhhhh.ee........................hhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.2          -------------------------------------------------Exon 1.4b  PDB: B:650-692 UniProt: 167-209 ------------------------------------------------------Exon 1.6  Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.3  PDB: B:600-650 UniProt: 117-167          -----------------------------------------Exon 1.5  PDB: B:692-747 UniProt: 209-264               -------- Transcript 1 (2)
                 1d7x B 583 FRTFPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPDSPET 755
                                   592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (MMP3_HUMAN | P08254)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0004175	endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0071732	cellular response to nitric oxide	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus.
	GO:0030574	collagen catabolic process	The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0010727	negative regulation of hydrogen peroxide metabolic process	Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide.
	GO:1903209	positive regulation of oxidative stress-induced cell death	Any process that activates or increases the frequency, rate or extent of oxidative stress-induced cell death.
	GO:0032461	positive regulation of protein oligomerization	Any process that activates or increases the frequency, rate or extent of protein oligomerization.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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	1d7x
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	MMP3_HUMAN \| P08254
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	3.4.24.17
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (12, 12)