1C8T - JenaLib

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS B:201 , HIS B:205 , HIS B:211 , TR1 B:265	BINDING SITE FOR RESIDUE ZN B 260
02	AC2	SOFTWARE	HIS B:151 , ASP B:153 , HIS B:166 , HIS B:179	BINDING SITE FOR RESIDUE ZN B 261
03	AC3	SOFTWARE	ASP B:158 , GLY B:159 , GLY B:161 , VAL B:163 , ASP B:181 , GLU B:184	BINDING SITE FOR RESIDUE CA B 262
04	AC4	SOFTWARE	HOH B:53 , ASP B:141 , GLY B:173 , ASN B:175 , ASP B:177	BINDING SITE FOR RESIDUE CA B 263
05	AC5	SOFTWARE	HOH B:42 , ASP B:107 , ASP B:182 , GLU B:184 , GLN B:185	BINDING SITE FOR RESIDUE CA B 264
06	AC6	SOFTWARE	HIS A:201 , HIS A:205 , HIS A:211 , TR1 A:265	BINDING SITE FOR RESIDUE ZN A 260
07	AC7	SOFTWARE	HIS A:151 , ASP A:153 , HIS A:166 , HIS A:179	BINDING SITE FOR RESIDUE ZN A 261
08	AC8	SOFTWARE	ASP A:158 , GLY A:159 , GLY A:161 , VAL A:163 , ASP A:181 , GLU A:184	BINDING SITE FOR RESIDUE CA A 262
09	AC9	SOFTWARE	ASP A:141 , GLY A:173 , ASN A:175 , ASP A:177	BINDING SITE FOR RESIDUE CA A 263
10	BC1	SOFTWARE	ASP A:107 , ASP A:182 , GLU A:184	BINDING SITE FOR RESIDUE CA A 264
11	BC2	SOFTWARE	ASN A:162 , VAL A:163 , LEU A:164 , ALA A:165 , LEU A:197 , HIS A:201 , GLN A:202 , HIS A:211 , ALA A:217 , LEU A:218 , TYR A:220 , PRO A:221 , LEU A:222 , TYR A:223 , HIS A:224 , ZN A:260 , PRO B:87 , ALA B:213 , THR B:215 , TYR B:220	BINDING SITE FOR RESIDUE TR1 A 265
12	BC3	SOFTWARE	HOH A:41 , PRO A:87 , THR A:215 , GLU A:216 , ASN B:162 , LEU B:164 , VAL B:198 , HIS B:201 , GLN B:202 , HIS B:205 , HIS B:211 , ALA B:217 , LEU B:218 , TYR B:220 , PRO B:221 , LEU B:222 , TYR B:223 , HIS B:224 , ZN B:260	BINDING SITE FOR RESIDUE TR1 B 265

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (5, 10)

Asymmetric/Biological Unit (5, 10)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000299855	1a	ENSE00002171374	chr11:102714534-102714173	362	MMP3_HUMAN	1-35	35	0	-	-
1.2	ENST00000299855	2	ENSE00001105428	chr11:102713647-102713403	245	MMP3_HUMAN	36-117	82	2	A:86-100 B:86-100	15 15
1.3	ENST00000299855	3	ENSE00001642002	chr11:102713310-102713162	149	MMP3_HUMAN	117-167	51	2	A:100-150 B:100-150	51 51
1.4b	ENST00000299855	4b	ENSE00001105420	chr11:102713010-102712885	126	MMP3_HUMAN	167-209	43	2	A:150-192 B:150-192	43 43
1.5	ENST00000299855	5	ENSE00001657829	chr11:102711324-102711160	165	MMP3_HUMAN	209-264	56	2	A:192-247 B:192-247	56 56
1.6	ENST00000299855	6	ENSE00001105427	chr11:102710983-102710839	145	MMP3_HUMAN	264-312	49	2	A:247-252 B:247-252	6 6
1.7	ENST00000299855	7	ENSE00001105439	chr11:102709974-102709841	134	MMP3_HUMAN	312-357	46	0	-	-
1.8	ENST00000299855	8	ENSE00001801971	chr11:102709441-102709282	160	MMP3_HUMAN	357-410	54	0	-	-
1.9	ENST00000299855	9	ENSE00001105448	chr11:102708132-102708029	104	MMP3_HUMAN	410-445	36	0	-	-
1.11	ENST00000299855	11	ENSE00001292630	chr11:102706957-102706532	426	MMP3_HUMAN	445-477	33	0	-	-

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:167
 aligned with MMP3_HUMAN | P08254 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:167
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       
           MMP3_HUMAN   103 FPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPDS 269
               SCOP domains d1c8ta_ A: Stromelysin-1 (MMP-3)                                                                                                                                        SCOP domains
               CATH domains 1c8tA00 A:86-252 Collagenase (Catalytic Domain)                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee....ee.....eehhhhhhhhhhhhh....................hhhhh..hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2       -------------------------------------------------Exon 1.4b  PDB: A:150-192 UniProt: 167-209 ------------------------------------------------------1.6    Transcript 1 (1)
           Transcript 1 (2) --------------Exon 1.3  PDB: A:100-150 UniProt: 117-167          -----------------------------------------Exon 1.5  PDB: A:192-247 UniProt: 209-264               ----- Transcript 1 (2)
                 1c8t A  86 FPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHQIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPDP 252
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245

Chain B from PDB  Type:PROTEIN  Length:167
 aligned with MMP3_HUMAN | P08254 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:167
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       
           MMP3_HUMAN   103 FPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPDS 269
               SCOP domains d1c8tb_ B: Stromelysin-1 (MMP-3)                                                                                                                                        SCOP domains
               CATH domains 1c8tB00 B:86-252 Collagenase (Catalytic Domain)                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee.......hhhhhhhhhhhhhhhhhhh...eeee.......eeeeee.................eee..........eeee....ee.....eehhhhhhhhhhhhhh..........................hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2       -------------------------------------------------Exon 1.4b  PDB: B:150-192 UniProt: 167-209 ------------------------------------------------------1.6    Transcript 1 (1)
           Transcript 1 (2) --------------Exon 1.3  PDB: B:100-150 UniProt: 117-167          -----------------------------------------Exon 1.5  PDB: B:192-247 UniProt: 209-264               ----- Transcript 1 (2)
                 1c8t B  86 FPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHQIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPDP 252
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (MMP3_HUMAN | P08254)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0004175	endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0071732	cellular response to nitric oxide	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus.
	GO:0030574	collagen catabolic process	The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0010727	negative regulation of hydrogen peroxide metabolic process	Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide.
	GO:1903209	positive regulation of oxidative stress-induced cell death	Any process that activates or increases the frequency, rate or extent of oxidative stress-induced cell death.
	GO:0032461	positive regulation of protein oligomerization	Any process that activates or increases the frequency, rate or extent of protein oligomerization.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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	Cis Peptide Bonds
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	1c8t
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	MMP3_HUMAN \| P08254
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	3.4.24.17
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (12, 12)