Chain 1 from PDB Type:PROTEIN Length:143
aligned with SCAFD_BPPHS | P69486 from UniProtKB/Swiss-Prot Length:152
Alignment length:143
15 25 35 45 55 65 75 85 95 105 115 125 135 145
SCAFD_BPPHS 6 EQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRA 148
SCOP domains d1al01_ 1: Scaffolding protein gpD of bacteriophage procapsid SCOP domains
CATH domains 1al0100 1:6-148 Procapsid Of Bacteriophage Phix174, Chain 1 CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhh.......hhhhhhh.......hhhhhhhhhhhhhhh.hhhhhh........hhhhhhhhhhh......hhhhhhh.....hhhhhh.......hhhhhhhhhhhhhh.........hhhh..... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1al0 1 6 EQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRA 148
15 25 35 45 55 65 75 85 95 105 115 125 135 145
Chain 2 from PDB Type:PROTEIN Length:133
aligned with SCAFD_BPPHS | P69486 from UniProtKB/Swiss-Prot Length:152
Alignment length:133
15 25 35 45 55 65 75 85 95 105 115 125 135
SCAFD_BPPHS 6 EQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDA 138
SCOP domains d1al02_ 2: Scaffolding protein gpD of bacteriophage procapsid SCOP domains
CATH domains 1al0200 2:6-138 Procapsid Of Bacteriophage Phix174, Chain 1 CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhh.hhhhhhhhhhhhh......hhhhhhhh.........hhhhhhhhhhhhhhhhhhh........hhhhhhhhhh...hhhhhhhhhhh....................hhhhhhhhh........... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
1al0 2 6 EQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDA 138
15 25 35 45 55 65 75 85 95 105 115 125 135
Chain 3 from PDB Type:PROTEIN Length:140
aligned with SCAFD_BPPHS | P69486 from UniProtKB/Swiss-Prot Length:152
Alignment length:140
14 24 34 44 54 64 74 84 94 104 114 124 134 144
SCAFD_BPPHS 5 TEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQ 144
SCOP domains d1al03_ 3: Scaffolding protein gpD of bacteriophage procapsid SCOP domains
CATH domains 1al0300 3:5-144 Procapsid Of Bacteriophage Phix174, Chain 1 CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhhhhhhhhh.......hhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..hhhhhhhhhhh.....hhhhhh.......hhhhhhhhhhhhhhh............. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1al0 3 5 TEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQ 144
14 24 34 44 54 64 74 84 94 104 114 124 134 144
Chain 4 from PDB Type:PROTEIN Length:146
aligned with SCAFD_BPPHS | P69486 from UniProtKB/Swiss-Prot Length:152
Alignment length:146
16 26 36 46 56 66 76 86 96 106 116 126 136 146
SCAFD_BPPHS 7 QSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM 152
SCOP domains d1al04_ 4: Scaffolding protein gpD of bacteriophage procapsid SCOP domains
CATH domains 1al0400 4:7-152 Procapsid Of Bacteriophage Phix174, Chain 1 CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....hhhhhhhhhh..........hhhhhhh..........hhhhhhhhhhhhhhhhhhh........hhhhhhhhhh......hhhhhhhh..................hhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1al0 4 7 QSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM 152
16 26 36 46 56 66 76 86 96 106 116 126 136 146
Chain B from PDB Type:PROTEIN Length:49
aligned with SCAFB_BPPHS | P03633 from UniProtKB/Swiss-Prot Length:120
Alignment length:120
10 20 30 40 50 60 70 80 90 100 110 120
SCAFB_BPPHS 1 MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGVLNPTYQAGLRRDAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWRIQPAEFYRFHDAEVNTFGYF 120
SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ........-----------------------------------------------------------------------.......hhhhhh...................hhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
1al0 B 1 MEQLTKNQ-----------------------------------------------------------------------GATCDDKSAQIYARFDKNDWRIQPAEFYRFHDAEVNTFGYF 120
| - - - - - - - 80 90 100 110 120
8 80
Chain F from PDB Type:PROTEIN Length:418
aligned with CAPSD_BPPHS | P03641 from UniProtKB/Swiss-Prot Length:427
Alignment length:418
14 24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384 394 404 414
CAPSD_BPPHS 5 QTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRD 422
SCOP domains d1al0f_ F: Microvirus capsid proteins SCOP domains
CATH domains 1al0F00 F:4-421 Bacteriophage G4 Capsid Proteins Gpf, Gpg, Gpj, subunit 1 CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......eeee..eeeeeee.........eeee......eeeeeeee............eeeee..eeeehhhh....hhhhhhhhhh.....eee........hhh........eeehhhhhhhhhhhhhh.............hhh..hhhhh..................................hhhhhhhhhhhhhhhhhhh....hhhhhhhh.................eeeee......................eeeeee........eeee..eeeee.........hhhh.....hhhh...hhhhh....eeeehhh.........eeee...hhh.......................................hhh........eeeeeeeeeeeee....... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1al0 F 4 QTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRD 421
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373 383 393 403 413
Chain G from PDB Type:PROTEIN Length:175
aligned with G_BPPHS | P03643 from UniProtKB/Swiss-Prot Length:175
Alignment length:175
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170
G_BPPHS 1 MFQTFISRHNSNFFSDKLVLTSVTPASSAPVLQTPKATSSTLYFDSLTVNAGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVPTTLPTAYDVYPLNGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNFTATKCRGLVSLNQVIKEIICLQPLK 175
SCOP domains d1al0g_ G: Microvirus capsid proteins SCOP domains
CATH domains 1al0G00 G:1-175 [code=2.60.120.20, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..............eee.....................eeeeee..eee..eeeeeeeeee........eeee..eeeeee......eeeeeeeee...........eee....eee..eeeee..eeee........eeeeeeeeeeee..eeeeeeeeee............. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1al0 G 1 MFQTFISRHNSNFFSDKLVLTSVTPASSAPVLQTPKATSSTLYFDSLTVNAGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVPTTLPTAYDVYPLNGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNFTATKCRGLVSLNQVIKEIICLQPLK 175
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170
Legend: |
|
→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |