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3K5N
Biol. Unit 1
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Asym.Unit (263 KB)
Biol.Unit 1 (256 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA BINARY COMPLEX
Authors
:
W. Yang, F. Wang
Date
:
07 Oct 09 (Deposition) - 02 Feb 10 (Release) - 02 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.15
Chains
:
Asym. Unit : A,B,P,T
Biol. Unit 1: A,B,P,T (1x)
Keywords
:
Dna Damage, Dna Repair, Dna-Binding, Dna-Directed Dna Polymerase, Nucleotidyltransferase, Sos Response, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Wang, W. Yang
Structural Insight Into Translesion Synthesis By Dna Pol Ii.
Cell(Cambridge, Mass. ) V. 139 1279 2009
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_DPO2_ECOLI_001 (G401D, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DPO2_ECOLI_001
*
G
401
D
DPO2_ECOLI
---
---
A
G
401
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DNA_POLYMERASE_B (A:543-551,B:543-551)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_POLYMERASE_B
PS00116
DNA polymerase family B signature.
DPO2_ECOLI
543-551
2
A:543-551
B:543-551
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3k5na1 (A:1-389)
1b: SCOP_d3k5nb1 (B:0-389)
2a: SCOP_d3k5na2 (A:390-783)
2b: SCOP_d3k5nb2 (B:390-769)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
DnaQ-like 3'-5' exonuclease
(253)
Protein domain
:
automated matches
(19)
Escherichia coli [TaxId: 562]
(13)
1a
d3k5na1
A:1-389
1b
d3k5nb1
B:0-389
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
DNA polymerase I
(233)
Protein domain
:
automated matches
(26)
Escherichia coli [TaxId: 562]
(3)
2a
d3k5na2
A:390-783
2b
d3k5nb2
B:390-769
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CATH Domains
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_DNA_pol_B_3k5nB01 (B:444-769)
1b: PFAM_DNA_pol_B_3k5nB02 (B:444-769)
1c: PFAM_DNA_pol_B_3k5nB03 (B:444-769)
1d: PFAM_DNA_pol_B_3k5nB04 (B:444-769)
2a: PFAM_DNA_pol_B_exo1_3k5nB05 (B:49-296)
2b: PFAM_DNA_pol_B_exo1_3k5nB06 (B:49-296)
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Clan
:
DNA_pol_B-like
(44)
Family
:
DNA_pol_B
(38)
Escherichia coli (strain K12)
(9)
1a
DNA_pol_B-3k5nB01
B:444-769
1b
DNA_pol_B-3k5nB02
B:444-769
1c
DNA_pol_B-3k5nB03
B:444-769
1d
DNA_pol_B-3k5nB04
B:444-769
Clan
:
RNase_H
(288)
Family
:
DNA_pol_B_exo1
(38)
Escherichia coli (strain K12)
(9)
2a
DNA_pol_B_exo1-3k5nB05
B:49-296
2b
DNA_pol_B_exo1-3k5nB06
B:49-296
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