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3CMY
Asym. Unit
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Asym.Unit (42 KB)
Biol.Unit 1 (38 KB)
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Models
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Title
:
STRUCTURE OF A HOMEODOMAIN IN COMPLEX WITH DNA
Authors
:
G. Birrane, J. A. A. Ladias, A. Soni
Date
:
24 Mar 08 (Deposition) - 17 Feb 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C (2 x)
Biol. Unit 1: A,B,C (2x)
Keywords
:
Dna-Binding Protein, Dna, Transcription Regulation, Transcription Regulator-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Birrane, A. Soni, J. A. Ladias
Structural Basis For Dna Recognition By The Human Pax3 Homeodomain.
Biochemistry V. 48 1148 2009
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
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Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:4
BINDING SITE FOR RESIDUE EDO A 61
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SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_003804 (F20S, chain A, )
2: VAR_003805 (V47F, chain A, )
3: VAR_017536 (W48C, chain A, )
4: VAR_013619 (R52C, chain A, )
5: VAR_017537 (R53C, chain A, )
6: VAR_003806 (R53G, chain A, )
7: VAR_017538 (R53H, chain A, )
8: VAR_017539 (R55K, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003804
F
238
S
PAX3_HUMAN
Disease (WS1)
---
A
F
20
S
2
UniProt
VAR_003805
V
265
F
PAX3_HUMAN
Disease (WS1)
---
A
V
47
F
3
UniProt
VAR_017536
W
266
C
PAX3_HUMAN
Disease (WS1)
---
A
W
48
C
4
UniProt
VAR_013619
R
270
C
PAX3_HUMAN
Disease (WS3)
---
A
R
52
C
5
UniProt
VAR_017537
R
271
C
PAX3_HUMAN
Disease (WS1)
---
A
R
53
C
6
UniProt
VAR_003806
R
271
G
PAX3_HUMAN
Disease (WS1)
---
A
R
53
G
7
UniProt
VAR_017538
R
271
H
PAX3_HUMAN
Disease (WS1)
---
A
R
53
H
8
UniProt
VAR_017539
R
273
K
PAX3_HUMAN
Unclassified
---
A
R
55
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: HOMEOBOX_2 (A:1-59)
2: HOMEOBOX_1 (A:34-57)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HOMEOBOX_2
PS50071
'Homeobox' domain profile.
PAX3_HUMAN
217-277
1
A:1-59
2
HOMEOBOX_1
PS00027
'Homeobox' domain signature.
PAX3_HUMAN
252-275
1
A:34-57
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3cmya_ (A:)
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Classes
(
)
(
)
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)
Superfamilies
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)
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)
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)
(
)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Homeodomain
(93)
Protein domain
:
automated matches
(13)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d3cmya_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (42 KB)
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