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Class: All alpha proteins (14657)
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Fold: DNA/RNA-binding 3-helical bundle (1299)
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Superfamily: Homeodomain-like (373)
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Family: Homeodomain (93)
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Protein domain: Antennapedia Homeodomain (5)
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Fruit fly (Drosophila melanogaster) [TaxId: 7227] (5)
1AHDP:DETERMINATION OF THE NMR SOLUTION STRUCTURE OF AN ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX
1HOMA:DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
1SANA:THE DES(1-6)ANTENNAPEDIA HOMEODOMAIN: COMPARISON OF THE NMR SOLUTION STRUCTURE AND THE DNA BINDING AFFINITY WITH THE INTACT ANTENNAPEDIA HOMEODOMAIN
2HOAA:STRUCTURE DETERMINATION OF THE ANTP(C39->S) HOMEODOMAIN FROM NUCLEAR MAGNETIC RESONANCE DATA IN SOLUTION USING A NOVEL STRATEGY FOR THE STRUCTURE CALCULATION WITH THE PROGRAMS DIANA, CALIBA, HABAS AND GLOMSA
9ANTA:; B:ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX
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Protein domain: automated matches (13)
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Fruit fly (Drosophila melanogaster) [TaxId: 7227] (5)
2R5YA:; B:STRUCTURE OF SCR/EXD COMPLEX BOUND TO A CONSENSUS HOX-EXD SITE
2R5ZA:; B:STRUCTURE OF SCR/EXD COMPLEX BOUND TO A DNA SEQUENCE DERIVED FROM THE FKH GENE
3A01A:; B:; E:; F:CRYSTAL STRUCTURE OF ARISTALESS AND CLAWLESS HOMEODOMAINS BOUND TO DNA
3A02A:CRYSTAL STRUCTURE OF ARISTALESS HOMEODOMAIN
3LNQA:STRUCTURE OF ARISTALESS HOMEODOMAIN IN COMPLEX WITH DNA
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Human (Homo sapiens) [TaxId: 9606] (7)
2DA6A:SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF HEPATOCYTE NUCLEAR FACTOR 1-BETA (HNF-1BETA)
2LMDA:MINIMAL CONSTRAINTS SOLUTION NMR STRUCTURE OF PROSPERO HOMEOBOX PROTEIN 1 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR4660B
2LP0A:THE SOLUTION STRUCTURE OF HOMEODOMAIN-PROTEIN COMPLEX
3CMYA:STRUCTURE OF A HOMEODOMAIN IN COMPLEX WITH DNA
3K2AA:; B:CRYSTAL STRUCTURE OF THE HOMEOBOX DOMAIN OF HUMAN HOMEOBOX PROTEIN MEIS2
3RKQA:; B:NKX2.5 HOMEODOMAIN DIMER BOUND TO ANF-242 DNA
4J19A:; B:STRUCTURE OF A NOVEL TELOMERE REPEAT BINDING PROTEIN BOUND TO DNA
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Mouse (Mus musculus) [TaxId: 10090] (1)
2HI3A:SOLUTION STRUCTURE OF THE HOMEODOMAIN-ONLY PROTEIN HOP
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Protein domain: DNA-binding protein SATB2 (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
1WI3A:SOLUTION STRUCTURE OF THE HOMEODOMAIN OF KIAA1034 PROTEIN
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Protein domain: Engrailed Homeodomain (12)
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Fruit fly (Drosophila melanogaster) [TaxId: 7227] (12)
1DU0A:; B:ENGRAILED HOMEODOMAIN Q50A VARIANT DNA COMPLEX
1ENHA:STRUCTURAL STUDIES OF THE ENGRAILED HOMEODOMAIN
1HDDC:; D:CRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 ANGSTROMS RESOLUTION: A FRAMEWORK FOR UNDERSTANDING HOMEODOMAIN-DNA INTERACTIONS
1P7IA:; B:; C:; D:CRYSTAL STRUCTURE OF ENGRAILED HOMEODOMAIN MUTANT K52A
1P7JA:; C:; D:; B:CRYSTAL STRUCTURE OF ENGRAILED HOMEODOMAIN MUTANT K52E
1ZTRA:0-59SOLUTION STRUCTURE OF ENGRAILED HOMEODOMAIN L16A MUTANT
2HDDA:; B:ENGRAILED HOMEODOMAIN Q50K VARIANT DNA COMPLEX
2HOSA:; B:PHAGE-SELECTED HOMEODOMAIN BOUND TO UNMODIFIED DNA
2HOTA:; B:PHAGE SELECTED HOMEODOMAIN BOUND TO MODIFIED DNA
2JWTA:SOLUTION STRUCTURE OF ENGRAILED HOMEODOMAIN WT
2P81A:ENGRAILED HOMEODOMAIN HELIX-TURN-HELIX MOTIF
3HDDA:; B:ENGRAILED HOMEODOMAIN DNA COMPLEX
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Protein domain: Even-skipped homeodomain (1)
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Fruit fly (Drosophila melanogaster) [TaxId: 7227] (1)
1JGGA:; B:EVEN-SKIPPED HOMEODOMAIN COMPLEXED TO AT-RICH DNA
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Protein domain: Extradenticle (exd) homeodomain (1)
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Fruit fly (Drosophila melanogaster) [TaxId: 7227] (1)
1B8IB:STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
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Protein domain: Fushi Tarazu protein (1)
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Fruit fly (Drosophila melanogaster) [TaxId: 7227] (1)
1FTZA:NUCLEAR MAGNETIC RESONANCE SOLUTION STRUCTURE OF THE FUSHI TARAZU HOMEODOMAIN FROM DROSOPHILA AND COMPARISON WITH THE ANTENNAPEDIA HOMEODOMAIN
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Protein domain: Hepatocyte nuclear factor 1a (LFB1/HNF1) (3)
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Human (Homo sapiens) [TaxId: 9606] (1)
1IC8A:201-276; B:201-278HEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE PRODUCT
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Rat (Rattus rattus) [TaxId: 10117] (2)
1LFBA:THE X-RAY STRUCTURE OF AN ATYPICAL HOMEODOMAIN PRESENT IN THE RAT LIVER TRANSCRIPTION FACTOR LFB1(SLASH)HNF1 AND IMPLICATIONS FOR DNA BINDING
2LFBA:HOMEODOMAIN FROM RAT LIVER LFB1/HNF1 TRANSCRIPTION FACTOR, NMR, 20 STRUCTURES
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Protein domain: Hepatocyte nuclear factor 6 (1)
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Mouse (Mus musculus) [TaxId: 10090] (1)
1S7EA:103-152SOLUTION STRUCTURE OF HNF-6
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Protein domain: Homeo-prospero domain of Prospero protein (2)
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Fruit fly (Drosophila melanogaster) [TaxId: 7227] (2)
1MIJA:CRYSTAL STRUCTURE OF THE HOMEO-PROSPERO DOMAIN OF D. MELANOGASTER PROSPERO
1XPXA:STRUCTURAL BASIS OF PROSPERO-DNA INTERACTION; IMPLICATIONS FOR TRANSCRIPTION REGULATION IN DEVELOPING CELLS
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Protein domain: Homeobox protein hox-a9 (1)
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Mouse (Mus musculus) [TaxId: 10090] (1)
1PUFA:CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
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Protein domain: Homeobox protein hox-b1 (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
1B72A:PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX
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Protein domain: Homeobox protein hox-b13 (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
2CRAA:7-64SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF HUMAN HOMEO BOX B13
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Protein domain: Homeobox protein pknox1 (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
1X2NA:6-67SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF HUMAN HOMEOBOX PROTEIN PKNOX1
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Protein domain: Homeobox protein prh (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
2E1OA:8-64SOLUTION STRUCTURE OF RSGI RUH-028, A HOMEOBOX DOMAIN FROM HUMAN CDNA
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Protein domain: Homeobox-containing protein 1, HMBOX1 (Flj21616) (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
2CUFA:8-89SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF THE HUMAN HYPOTHETICAL PROTEIN FLJ21616
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Protein domain: Homeobox-leucine zipper protein Homez (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
2ECCA:SOLUTION STRUCTURE OF THE SECOND HOMEOBOX DOMAIN OF HUMAN HOMEODOMAIN LEUCINE ZIPPER-ENCODING GENE (HOMEZ)
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Protein domain: Homeodomain-only protein, Hop (1)
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Mouse (Mus musculus) [TaxId: 10090] (1)
1UHSA:SOLUTION STRUCTURE OF MOUSE HOMEODOMAIN-ONLY PROTEIN HOP
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Protein domain: Homeotic bicoid protein (1)
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Fruit fly (Drosophila melanogaster) [TaxId: 7227] (1)
1ZQ3P:2-68NMR SOLUTION STRUCTURE OF THE BICOID HOMEODOMAIN BOUND TO THE CONSENSUS DNA BINDING SITE TAATCC
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Protein domain: Hypothetical protein 4930532d21rik (1)
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Mouse (Mus musculus) [TaxId: 10090] (1)
1X58A:8-56SOLUTION STRUCTURES OF THE MYB-LIKE DNA BINDING DOMAIN OF 4930532D21RIK PROTEIN
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Protein domain: Insulin gene enhancer protein isl-1 (1)
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Norway rat (Rattus norvegicus) [TaxId: 10116] (1)
1BW5A:THE NMR SOLUTION STRUCTURE OF THE HOMEODOMAIN OF THE RAT INSULIN GENE ENHANCER PROTEIN ISL-1, 50 STRUCTURES
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Protein domain: LAG1 longevity assurance homolog 5, LASS5 (1)
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Mouse (Mus musculus) [TaxId: 10090] (1)
2CQXA:8-66SOLUTION STRUCTURE OF RSGI RUH-034, A HOMEODOMAIN FROM MOUSE CDNA
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Protein domain: Lag1 longevity assurance homolog 6, LASS6 (1)
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Mouse (Mus musculus) [TaxId: 10090] (1)
1X2MA:8-59SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF MOUSE LAG1 LONGEVITY ASSURANCE HOMOLOG 6
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Protein domain: mat alpha2 Homeodomain (6)
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Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (6)
1AKHB:MAT A1/ALPHA2/DNA TERNARY COMPLEX
1APLC:; D:CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS
1K61A:; B:; C:; D:MATALPHA2 HOMEODOMAIN BOUND TO DNA
1LE8B:CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2-3A HETERODIMER BOUND TO DNA COMPLEX
1MNMC:; D:YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
1YRNB:CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA
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Protein domain: Mating type protein A1 Homeodomain (6)
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Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (6)
1AKHA:MAT A1/ALPHA2/DNA TERNARY COMPLEX
1F43A:SOLUTION STRUCTURE OF THE MATA1 HOMEODOMAIN
1LE8A:CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2-3A HETERODIMER BOUND TO DNA COMPLEX
1MH3A:472-526MALTOSE BINDING-A1 HOMEODOMAIN PROTEIN CHIMERA, CRYSTAL FORM I
1MH4A:472-523MALTOSE BINDING-A1 HOMEODOMAIN PROTEIN CHIMERA, CRYSTAL FORM II
1YRNA:CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA
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Protein domain: Msx-1 homeodomain (1)
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Mouse (Mus musculus) [TaxId: 10090] (1)
1IG7A:MSX-1 HOMEODOMAIN/DNA COMPLEX STRUCTURE
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Protein domain: Oct-1 POU Homeodomain (7)
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Human (Homo sapiens) [TaxId: 9606] (7)
1CQTA:102-161; B:602-661CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT
1E3OC:104-160CRYSTAL STRUCTURE OF OCT-1 POU DIMER BOUND TO MORE
1GT0C:97-159CRYSTAL STRUCTURE OF A POU/HMG/DNA TERNARY COMPLEX
1HF0A:102-159; B:102-159CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF OCT-1 BOUND TO DNA AS A DIMER
1O4XA:110-163TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT
1OCTC:102-161CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULES
1POGA:SOLUTION STRUCTURE OF THE OCT-1 POU-HOMEO DOMAIN DETERMINED BY NMR AND RESTRAINED MOLECULAR DYNAMICS
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Protein domain: Oct-2 POU Homeodomain (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
1HDPA:SOLUTION STRUCTURE OF A POU-SPECIFIC HOMEODOMAIN: 3D-NMR STUDIES OF HUMAN B-CELL TRANSCRIPTION FACTOR OCT-2
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Protein domain: Oct-3 POU Homeodomain (1)
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Mouse (Mus musculus) [TaxId: 10090] (1)
1OCPA:SOLUTION STRUCTURE OF OCT3 POU-HOMEODOMAIN
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Protein domain: Paired box protein pax6 (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
2CUEA:7-74SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF THE HUMAN PAIRED BOX PROTEIN PAX-6
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Protein domain: Paired protein (1)
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Fruit fly (Drosophila melanogaster) [TaxId: 7227] (1)
1FJLA:; B:; C:HOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA OLIGONUCLEOTIDE
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Protein domain: pbx1 (4)
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Human (Homo sapiens) [TaxId: 9606] (2)
1B72B:PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX
1PUFB:CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
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Mouse (Mus musculus) [TaxId: 10090] (2)
1DU6A:SOLUTION STRUCTURE OF THE TRUNCATED PBX HOMEODOMAIN
1LFUP:NMR SOLUTION STRUCTURE OF THE EXTENDED PBX HOMEODOMAIN BOUND TO DNA
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Protein domain: Pit-1 POU homeodomain (1)
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Norway rat (Rattus norvegicus) [TaxId: 10116] (1)
1AU7A:103-160; B:103-160PIT-1 MUTANT/DNA COMPLEX
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Protein domain: Pituitary homeobox 2 (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
2LKXA:1-60NMR STRUCTURE OF THE HOMEODOMAIN OF PITX2 IN COMPLEX WITH A TAATCC DNA BINDING SITE
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Protein domain: Thyroid transcription factor 1 homeodomain (1)
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Norway rat (Rattus norvegicus) [TaxId: 10116] (1)
1FTTA:THYROID TRANSCRIPTION FACTOR 1 HOMEODOMAIN (RATTUS NORVEGICUS)
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Protein domain: Transcriptional adaptor 2-like, TADA2L, isoform b (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
1X41A:8-54SOLUTION STRUCTURE OF THE MYB-LIKE DNA BINDING DOMAIN OF HUMAN TRANSCRIPTIONAL ADAPTOR 2-LIKE, ISOFORM B
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Protein domain: Ultrabithorax (ubx) homeodomain (1)
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Fruit fly (Drosophila melanogaster) [TaxId: 7227] (1)
1B8IA:STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
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Protein domain: VND/NK-2 protein (4)
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Fruit fly (Drosophila melanogaster) [TaxId: 7227] (4)
1NK2P:VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, 20 STRUCTURES
1NK3P:VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
1QRYA:HOMEOBOX PROTEIN VND (VENTRAL NERVOUS SYSTEM DEFECTIVE PROTEIN)
1VNDA:VND/NK-2 PROTEIN (HOMEODOMAIN), NMR
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Protein domain: ZF-HD homeobox protein At4g24660 (1)
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Thale cress (Arabidopsis thaliana) [TaxId: 3702] (1)
1WH7A:SOLUTION STRUCTURE OF HOMEOBOX DOMAIN OF ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN F22K18.140
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Protein domain: ZF-HD homeobox protein At5g65410 (1)
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Thale cress (Arabidopsis thaliana) [TaxId: 3702] (1)
1WH5A:SOLUTION STRUCTURE OF HOMEOBOX DOMAIN OF ARABIDOPSISTHALIANA ZINC FINGER HOMEOBOX FAMILY PROTEIN
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Protein domain: Zinc fingers and homeoboxes protein 1, ZHX1 (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
2ECBA:8-83THE SOLUTION STRUCTURE OF THE THIRD HOMEOBOX DOMAIN OF HUMAN ZINC FINGERS AND HOMEOBOXES PROTEIN