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2WTF
Asym. Unit
Info
Asym.Unit (193 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (95 KB)
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(1)
Title
:
DNA POLYMERASE ETA IN COMPLEX WITH THE CIS-DIAMMINEPLATINUM (II) 1,3-GTG INTRASTRAND CROSS-LINK
Authors
:
T. Reissner, S. Schneider, O. Ziv, S. Schorr, Z. Livneh, T. Carell
Date
:
16 Sep 09 (Deposition) - 31 Mar 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,O,P,S,T
Biol. Unit 1: A,O,P (1x)
Biol. Unit 2: B,S,T (1x)
Keywords
:
Transferase-Dna Complex, Nucleotidyltransferase, Translesion Dna Synthesis, Transferase, Dna-Binding, Dna Synthesis, Dna Replication, Mutator Protein, Dna Damage, Dna Repair
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. Reissner, S. Schneider, S. Schorr, T. Carell
Crystal Structure Of A Cisplatin-(1, 3-Gtg) Cross- Link Within Dna Polymerase Eta.
Angew. Chem. Int. Ed. Engl. V. 49 3077 2010
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
2a: CISPLATIN (CPTa)
2b: CISPLATIN (CPTb)
3a: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPa)
3b: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
10
Ligand/Ion
CALCIUM ION
2
CPT
2
Ligand/Ion
CISPLATIN
3
DTP
2
Ligand/Ion
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:30 , ASP B:155 , GLU B:156 , CA B:1510 , DTP B:1511 , HOH B:2020
BINDING SITE FOR RESIDUE CA B1509
02
AC2
SOFTWARE
ASP B:30 , MET B:31 , ASP B:155 , CA B:1509 , DTP B:1511
BINDING SITE FOR RESIDUE CA B1510
03
AC3
SOFTWARE
ASP A:30 , MET A:31 , ASN A:32 , ALA A:33 , PHE A:34 , PHE A:35 , ILE A:60 , ALA A:61 , TYR A:64 , ARG A:67 , ARG A:73 , ASP A:155 , LYS A:279 , CA A:1511 , CA A:1512 , DT O:-1 , DG O:2 , DC P:9
BINDING SITE FOR RESIDUE DTP A1510
04
AC4
SOFTWARE
ASP A:30 , MET A:31 , ASP A:155 , DTP A:1510 , CA A:1512
BINDING SITE FOR RESIDUE CA A1511
05
AC5
SOFTWARE
ASP A:30 , ASP A:155 , GLU A:156 , DTP A:1510 , CA A:1511
BINDING SITE FOR RESIDUE CA A1512
06
AC6
SOFTWARE
ASP B:30 , MET B:31 , ASN B:32 , ALA B:33 , PHE B:34 , PHE B:35 , ILE B:60 , ALA B:61 , TYR B:64 , ARG B:67 , ARG B:73 , ASP B:155 , LYS B:279 , CA B:1509 , CA B:1510 , HOH B:2001 , DT S:-1 , DG S:0 , DG S:2 , DC T:9
BINDING SITE FOR RESIDUE DTP B1511
07
AC7
SOFTWARE
GLY B:98 , GLU B:417
BINDING SITE FOR RESIDUE CA B1512
08
AC8
SOFTWARE
ASP A:318 , ASP A:321
BINDING SITE FOR RESIDUE CA A1513
09
AC9
SOFTWARE
ASP B:289
BINDING SITE FOR RESIDUE CA B1513
10
BC1
SOFTWARE
ASP A:289 , HOH A:2033
BINDING SITE FOR RESIDUE CA A1514
11
BC2
SOFTWARE
ASP B:318 , ASP B:321
BINDING SITE FOR RESIDUE CA B1514
12
BC3
SOFTWARE
GLY B:298 , GLU B:325
BINDING SITE FOR RESIDUE CA B1515
13
BC4
SOFTWARE
DG O:0 , DG O:2 , DC O:3
BINDING SITE FOR RESIDUE CPT O1014
14
BC5
SOFTWARE
DT S:-1 , DG S:0 , DG S:2 , DG T:8
BINDING SITE FOR RESIDUE CPT S1014
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: UMUC (A:26-309,B:26-309)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UMUC
PS50173
UmuC domain profile.
POLH_YEAST
26-309
2
A:26-309
B:26-309
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:1-509 | B:1-508)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDR419W
1
YDR419W.1
IV:1303167-1305065
1899
POLH_YEAST
1-632
632
2
A:1-509
B:1-508
509
508
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2wtfa2 (A:390-509)
1b: SCOP_d2wtfb2 (B:390-508)
2a: SCOP_d2wtfa1 (A:1-389)
2b: SCOP_d2wtfb1 (B:1-389)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Superfamily
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Family
:
automated matches
(41)
Protein domain
:
automated matches
(41)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
1a
d2wtfa2
A:390-509
1b
d2wtfb2
B:390-508
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Lesion bypass DNA polymerase (Y-family), catalytic domain
(104)
Protein domain
:
automated matches
(35)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(6)
2a
d2wtfa1
A:1-389
2b
d2wtfb1
B:1-389
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2wtfB04 (B:393-508)
1b: CATH_2wtfA04 (A:393-509)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
[code=3.30.1490.100, no name defined]
(80)
Baker's yeast (Saccharomyces cerevisiae)
(4)
1a
2wtfB04
B:393-508
1b
2wtfA04
A:393-509
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_IMS_2wtfB01 (B:29-276)
1b: PFAM_IMS_2wtfB02 (B:29-276)
2a: PFAM_IMS_C_2wtfB03 (B:365-500)
2b: PFAM_IMS_C_2wtfB04 (B:365-500)
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Clans
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Clan
:
no clan defined [family: IMS]
(76)
Family
:
IMS
(76)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(9)
1a
IMS-2wtfB01
B:29-276
1b
IMS-2wtfB02
B:29-276
Clan
:
no clan defined [family: IMS_C]
(74)
Family
:
IMS_C
(74)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(9)
2a
IMS_C-2wtfB03
B:365-500
2b
IMS_C-2wtfB04
B:365-500
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