CATH 3.4.0 - JenaLib Tree Browser

Architecture: 2-Layer Sandwich (8480)

Topology: Dna Ligase; domain 1 (375)

Homologous Superfamily: [code=3.30.1490.100, no name defined] (80)

[unclassified] (29)

1JX4	A:244-341	CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARY COMPLEX WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE
1JXL	A:244-341	CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARY COMPLEX WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE
1N48	A:244-334	Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAINING ABASIC LESION
1N56	A:244-336; B:244-336	Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAINING ABASIC LESION
1RYR	A:244-336	REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION
1RYS	A:244-336; B:244-336	REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION
1S0M	A:244-336; B:244-336	CRYSTAL STRUCTURE OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCT IN A TERNARY COMPLEX WITH A DNA POLYMERASE
1S0N	A:244-336	SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
1S0O	A:244-336; B:244-336	SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
1S10	A:244-336	SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
1S97	A:244-336; B:244-336; C:244-336; D:244-336	DPO4 WITH GT MISMATCH
1S9F	B:244-336; C:244-336; D:244-336; A:244-335	DPO WITH AT MATCHED
1T3N	A:299-414; B:719-834	STRUCTURE OF THE CATALYTIC CORE OF DNA POLYMERASE IOTA IN COMPLEX WITH DNA AND DTTP
1ZET	A:299-414	X-RAY DATA DO NOT SUPPORT HOOGSTEEN BASE-PAIRING DURING REPLICATION BY HUMAN POLYMERASE IOTA
2AGO	A:244-336	FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND PYROPHOSPHOROLYSIS
2AGP	A:244-336; B:244-336	FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND PYROPHOSPHOROLYSIS
2AGQ	A:244-336	FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND PYROPHOSPHOROLYSIS
2ALZ	A:299-414	TERNARY COMPLEX OF HPOLI WITH DNA AND DCTP
2ASD	A:244-336; B:1244-1336	OXOG-MODIFIED INSERTION TERNARY COMPLEX
2ASJ	A:244-336; B:1244-1336	OXOG-MODIFIED PREINSERTION BINARY COMPLEX
2ASL	A:244-336; B:1244-1336	OXOG-MODIFIED POSTINSERTION BINARY COMPLEX
2ATL	A:244-336; B:1244-1336	UNMODIFIED INSERTION TERNARY COMPLEX
2AU0	A:244-336; B:1244-1336	UNMODIFIED PREINSERTION BINARY COMPLEX
2DPI	A:299-414	TERNARY COMPLEX OF HPOLI WITH DNA AND DCTP
2DPJ	A:299-414	STRUCTURE OF HPOLI WITH DNA AND DTTP
2FLL	A:299-414	TERNARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH DNA AND DTTP
2FLN	A:299-414	BINARY COMPLEX OF CATALYTIC CORE OF HUMAN DNA POLYMERASE IOTA WITH DNA (TEMPLATE A)
2FLP	A:299-414	BINARY COMPLEX OF THE CATALYTIC CORE OF HUMAN DNA POLYMERASE IOTA WITH DNA (TEMPLATE G)
2IMW	P:244-336	MECHANISM OF TEMPLATE-INDEPENDENT NUCLEOTIDE INCORPORATION CATALYZED BY A TEMPLATE-DEPENDENT DNA POLYMERASE

Baker's yeast (Saccharomyces cerevisiae) (4)

1JIH	A:393-509; B:393-509	YEAST DNA POLYMERASE ETA
2R8J	A:393-509; B:393-509	STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE ETA IN COMPLEX WITH 1,2-D(GPG)-CISPLATIN CONTAINING DNA
2R8K	A:393-509; B:393-509	STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE ETA IN COMPLEX WITH 1,2-D(GPG)-CISPLATIN CONTAINING DNA
2WTF	B:393-508; A:393-509	DNA POLYMERASE ETA IN COMPLEX WITH THE CIS-DIAMMINEPLATINUM (II) 1,3-GTG INTRASTRAND CROSS-LINK

Escherichia coli. Organism_taxid: 562. (1)

1UNN

C:241-351; D:240-351

COMPLEX OF BETA-CLAMP PROCESSIVITY FACTOR AND LITTLE FINGER DOMAIN OF POLIV

Human (Homo sapiens) (12)

1T94	A:414-515; B:413-517	CRYSTAL STRUCTURE OF THE CATALYTIC CORE OF HUMAN DNA POLYMERASE KAPPA
3EPG	A:299-414	STRUCTURE OF HUMAN DNA POLYMERASE IOTA COMPLEXED WITH N2-ETHYLGUANINE
3EPI	A:299-414	STRUCTURE OF HUMAN DNA POLYMERASE IOTA COMPLEXED WITH N2-ETHYLGUANINE AND INCOMING TTP
3G6V	A:299-414	DNA SYNTHESIS ACROSS AN ABASIC LESION BY HUMAN DNA POLYMERASE-IOTA
3G6X	A:299-414	TERNARY COMPLEX OF DNA POLYMERASE IOTA:DNA:DGTP WITH AN ABASIC SITE AT THE TEMPLATING POSITION
3G6Y	A:299-414	TERNARY COMPLEX OF DNA POLYMERASE IOTA:DNA:DTTP WITH AN ABASIC SITE AT THE TEMPLATING POSITION
3GV5	B:299-414; D:299-415	HUMAN DNA POLYMERASE IOTA IN COMPLEX WITH T TEMPLATE DNA AND INCOMING DDADP
3GV7	B:299-414	HUMAN DNA POLYMERASE IOTA IN COMPLEX WITH T TEMPLATE DNA AND INCOMING DTTP
3GV8	B:299-414	HUMAN DNA POLYMERASE IOTA IN COMPLEX WITH T TEMPLATE DNA AND INCOMING DGTP
3H40	A:299-414	BINARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH TEMPLATE U/T
3H4B	A:299-414	TERNARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH TEMPLATE U/T AND INCOMING DATP
3H4D	A:299-414	TERNARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH TEMPLATE U/T AND INCOMING DGTP

Sulfolobus acidocaldarius. Organism_taxid: 2285. (3)

3BQ0	A:244-341	PRE-INSERTION BINARY COMPLEX OF DBH DNA POLYMERASE
3BQ1	A:244-341	INSERTION TERNARY COMPLEX OF DBH DNA POLYMERASE
3BQ2	A:244-341	POST-INSERTION BINARY COMPLEX OF DBH DNA POLYMERASE

Sulfolobus fataricus (Sulfolobus solfataricus) (3)

2BQ3	A:244-336	DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE
2BQR	A:244-336	DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE
2BQU	A:244-336	DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE

Sulfolobus solfataricus (Sulfolobus solfataricus) (1)

2BR0

A:244-336

DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE

Sulfolobus solfataricus p2. Organism_taxid: 273057. Strain: p2. (1)

2IBK

A:244-341

BYPASS OF MAJOR BENZOPYRENE-DG ADDUCT BY Y-FAMILY DNA POLYMERASE WITH UNIQUE STRUCTURAL GAP

Sulfolobus solfataricus. (1)

2R8G

A:244-341

SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE 1,N2-PROPANODEOXYGUANOSINE (PDG) BY THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 POLYMERASE

Sulfolobus solfataricus. Organism_taxid: 2287. (4)

1K1Q	A:244-341; B:244-341	CRYSTAL STRUCTURE OF A DINB FAMILY ERROR PRONE DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS
1K1S	A:244-341	CRYSTAL STRUCTURE OF DINB FROM SULFOLOBUS SOLFATARICUS
2R8H	A:244-341	SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE 1,N2-PROPANODEOXYGUANOSINE (PDG) BY THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 POLYMERASE
2R8I	A:244-341	SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE 1,N2-PROPANODEOXYGUANOSINE (PDG) BY THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 POLYMERASE

Sulfolobus solfataricus. Organism_taxid: 2287. Strain: strain: p2. (1)

2J6S

A:244-336

TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DATP.

Sulfolobus solfataricus. Organism_taxid: 273057. Strain: p2. (1)

2IA6

A:244-341; B:244-341

BYPASS OF MAJOR BENZOPYRENE-DG ADDUCT BY Y-FAMILY DNA POLYMERASE WITH UNIQUE STRUCTURAL GAP

Sulfolobus solfataricus. Organism_taxid: 273057. Strain: p2. (18)

2C22	A:244-336	EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C28	A:244-336	EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C2D	A:244-336	EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C2E	A:244-336	EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C2R	A:244-336	EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2J6T	A:244-336	TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DATP.
2J6U	A:247-339	TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DGTP.
2JEF	A:244-336	THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOTIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2JEG	A:244-336	THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2JEI	A:244-336	THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2JEJ	A:244-336	THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2UVR	A:244-336	CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2UVU	A:244-336	CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2UVV	A:244-336	CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2UVW	A:244-336	CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2V9W	A:244-336; B:244-336	COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND
2VA2	A:244-336; B:244-336	COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND
2VA3	A:244-336	COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND

Sulfolobus solfataricus. Strain: p2. (1)

2RDJ

A:244-341; B:244-341

SNAPSHOTS OF A Y-FAMILY DNA POLYMERASE IN REPLICATION: DPO4 IN APO AND BINARY/TERNARY COMPLEX FORMS