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Class: Multi-domain proteins (alpha and beta) (2421)
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Fold: DNA/RNA polymerases (850)
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Superfamily: DNA/RNA polymerases (850)
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Family: Lesion bypass DNA polymerase (Y-family), catalytic domain (104)
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Protein domain: automated matches (35)
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Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (6)
2WTFA:1-389; B:1-389DNA POLYMERASE ETA IN COMPLEX WITH THE CIS-DIAMMINEPLATINUM (II) 1,3-GTG INTRASTRAND CROSS-LINK
2XGPA:0-389; B:-1-389YEAST DNA POLYMERASE ETA IN COMPLEX WITH C8-2-ACETYLAMINOFLUORENE CONTAINING DNA
2XGQA:0-389; B:-1-389STRUCTURE OF YEAST DNA POLYMERASE ETA IN COMPLEX WITH C8-N-ACETYL-2-AMINOANTHRACENE CONTAINING DNA
3MFHA:1-389DNA POLYMERASE ETA IN COMPLEX WITH UNDAMAGED DNA
3OHAA:-3-389YEAST DNA POLYMERASE ETA INSERTING DCTP OPPOSITE AN 8OXOG LESION
3OHBA:-2-389YEAST DNA POLYMERASE ETA EXTENDING FROM AN 8-OXOG LESION
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Sulfolobus acidocaldarius [TaxId: 2285] (1)
4NLGA:1-241Y-FAMILY DNA POLYMERASE CHIMERA DBH-DPO4(243-245)-DBH
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Sulfolobus solfataricus [TaxId: 2287] (2)
2ATLA:1-240; B:1001-1240UNMODIFIED INSERTION TERNARY COMPLEX
2AU0A:1-240; B:1001-1240UNMODIFIED PREINSERTION BINARY COMPLEX
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Sulfolobus solfataricus [TaxId: 273057] (26)
2C22A:1-240EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C28A:1-240EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C2DA:1-240EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C2EA:1-240EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2C2RA:1-240EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8-OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
2J6SA:1-240TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DATP.
2J6TA:1-240TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DATP.
2J6UA:1-243TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DGTP.
2JEFA:0-240THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOTIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2JEGA:0-240THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2JEIA:-1-240THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2JEJA:1-240THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE-STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
2UVRA:1-240CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2UVUA:0-240CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2UVVA:1-240CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2UVWA:1-240CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS
2V4QA:1-240POST-INSERTION COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH M1DG CONTAINING TEMPLATE DNA
2V4RA:1-241NON-PRODUCTIVE COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH DGTP SKIPPING THE M1DG ADDUCT TO PAIR WITH THE NEXT TEMPLATE CYTOSINE
2V9WA:1-240; B:1-240COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND
2VA2A:1-240; B:0-240COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND
2VA3A:1-240COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE NUCLEOTIDE IN THE TEMPLATE STRAND
2W8KA:0-240Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2-NAPHTHYL-GUANINE ADDUCT IN SYN ORIENTATION
2W8LA:0-240Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2-NAPHTHYL-GUANINE ADDUCT IN ANTI ORIENTATION
2W9AA:0-240TERNARY COMPLEX OF DPO4 BOUND TO N2,N2-DIMETHYL-DEOXYGUANOSINE MODIFIED DNA WITH INCOMING DGTP
2W9BA:1-240; B:0-240BINARY COMPLEX OF DPO4 BOUND TO N2,N2-DIMETHYL-DEOXYGUANOSINE MODIFIED DNA
2W9CA:1-240; B:1-240TERNARY COMPLEX OF DPO4 BOUND TO N2,N2-DIMETHYL-DEOXYGUANOSINE MODIFIED DNA WITH INCOMING DTTP
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Protein domain: DinB homolog (DBH) (46)
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Sulfolobus acidocaldarius [TaxId: 2285] (3)
3BQ0A:1-241PRE-INSERTION BINARY COMPLEX OF DBH DNA POLYMERASE
3BQ1A:1-241INSERTION TERNARY COMPLEX OF DBH DNA POLYMERASE
3BQ2A:1-241POST-INSERTION BINARY COMPLEX OF DBH DNA POLYMERASE
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Sulfolobus solfataricus [TaxId: 2287] (3)
1IM4A:CRYSTAL STRUCTURE OF A DINB HOMOLOG (DBH) LESION BYPASS DNA POLYMERASE CATALYTIC FRAGMENT FROM SULFOLOBUS SOLFATARICUS
1K1QA:1-239; B:1-239CRYSTAL STRUCTURE OF A DINB FAMILY ERROR PRONE DNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS
1K1SA:1-239CRYSTAL STRUCTURE OF DINB FROM SULFOLOBUS SOLFATARICUS
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Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287] (40)
1JX4A:1-240CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARY COMPLEX WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE
1JXLA:1-240CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARY COMPLEX WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE
1N48A:1-240Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAINING ABASIC LESION
1N56A:1-240; B:1-240Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAINING ABASIC LESION
1RYRA:1-240REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION
1RYSA:1-240; B:1-240REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION
1S0MA:1-240; B:1-240CRYSTAL STRUCTURE OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCT IN A TERNARY COMPLEX WITH A DNA POLYMERASE
1S0NA:1-240SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
1S0OA:1-240; B:1-240SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
1S10A:1-240SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
1S97A:1-240; B:1-240; C:1-240; D:1-240DPO4 WITH GT MISMATCH
1S9FA:1-240; B:1-240; C:1-240; D:1-240DPO WITH AT MATCHED
2AGOA:2-240FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND PYROPHOSPHOROLYSIS
2AGPA:2-240; B:2-240FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND PYROPHOSPHOROLYSIS
2AGQA:2-240FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND PYROPHOSPHOROLYSIS
2ASDA:1-240; B:1001-1240OXOG-MODIFIED INSERTION TERNARY COMPLEX
2ASJA:1-240; B:1001-1240OXOG-MODIFIED PREINSERTION BINARY COMPLEX
2ASLA:1-240; B:1001-1240OXOG-MODIFIED POSTINSERTION BINARY COMPLEX
2BQ3A:1-240DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE
2BQRA:1-240DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE
2BQUA:1-240DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE
2BR0A:1-240DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE
2IA6A:1-240; B:1-240BYPASS OF MAJOR BENZOPYRENE-DG ADDUCT BY Y-FAMILY DNA POLYMERASE WITH UNIQUE STRUCTURAL GAP
2IBKA:1-240BYPASS OF MAJOR BENZOPYRENE-DG ADDUCT BY Y-FAMILY DNA POLYMERASE WITH UNIQUE STRUCTURAL GAP
2IMWP:1-240MECHANISM OF TEMPLATE-INDEPENDENT NUCLEOTIDE INCORPORATION CATALYZED BY A TEMPLATE-DEPENDENT DNA POLYMERASE
2R8GA:1-240SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE 1,N2-PROPANODEOXYGUANOSINE (PDG) BY THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 POLYMERASE
2R8HA:1-240SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE 1,N2-PROPANODEOXYGUANOSINE (PDG) BY THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 POLYMERASE
2R8IA:1-240SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE 1,N2-PROPANODEOXYGUANOSINE (PDG) BY THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4 POLYMERASE
2RDIA:1-240SNAPSHOTS OF A Y-FAMILY DNA POLYMERASE IN REPLICATION: DPO4 IN APO AND BINARY/TERNARY COMPLEX FORMS
2RDJA:1-240; B:1-240SNAPSHOTS OF A Y-FAMILY DNA POLYMERASE IN REPLICATION: DPO4 IN APO AND BINARY/TERNARY COMPLEX FORMS
2XCPA:1-240; B:0-240TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8-DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND DCTP - MAGNESIUM FORM
3FDSA:1-240STRUCTURAL INSIGHT INTO RECRUITMENT OF TRANSLESION DNA POLYMERASE DPO4 TO SLIDING CLAMP PCNA
3PR4A:1-240DPO4 Y12A MUTANT INCORPORATING DADP OPPOSITE TEMPLATE DT
3PR5B:1-240DPO4 Y12A MUTANT INCORPORATING ADP OPPOSITE TEMPLATE DT
3QZ7A:1-240T-3 TERNARY COMPLEX OF DPO4
3QZ8A:1-240TT-4 TERNARY COMPLEX OF DPO4
4JUZA:1-240TERNARY COMPLEX OF GAMMA-OHPDG ADDUCT MODIFIED DNA (ZERO PRIMER) WITH DNA POLYMERASE IV AND INCOMING DGTP
4JV0A:1-240RING-OPENING OF THE -OH-PDG ADDUCT IN TERNARY COMPLEXES WITH THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
4JV1A:1-240TERNARY COMPLEX OF GAMMA-OHPDG ADDUCT MODIFIED DNA WITH DNA (-1 PRIMER) POLYMERASE IV AND INCOMING DGTP
4JV2A:1-240TERNARY COMPLEX OF GAMMA-OHPDG ADDUCT MODIFIED DNA WITH DNA (-1 PRIMER) POLYMERASE IV AND INCOMING DATP
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Protein domain: DNA polymerase eta (3)
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Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (3)
1JIHA:1-389; B:1-389YEAST DNA POLYMERASE ETA
2R8JA:-1-389; B:1-389STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE ETA IN COMPLEX WITH 1,2-D(GPG)-CISPLATIN CONTAINING DNA
2R8KA:1-389; B:1-389STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE ETA IN COMPLEX WITH 1,2-D(GPG)-CISPLATIN CONTAINING DNA
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Protein domain: DNA polymerase iota (19)
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Human (Homo sapiens) [TaxId: 9606] (19)
1T3NA:27-299; B:447-719STRUCTURE OF THE CATALYTIC CORE OF DNA POLYMERASE IOTA IN COMPLEX WITH DNA AND DTTP
1ZETA:27-299X-RAY DATA DO NOT SUPPORT HOOGSTEEN BASE-PAIRING DURING REPLICATION BY HUMAN POLYMERASE IOTA
2ALZA:25-299TERNARY COMPLEX OF HPOLI WITH DNA AND DCTP
2DPIA:26-299TERNARY COMPLEX OF HPOLI WITH DNA AND DCTP
2DPJA:25-299STRUCTURE OF HPOLI WITH DNA AND DTTP
2FLLA:25-299TERNARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH DNA AND DTTP
2FLNA:26-299BINARY COMPLEX OF CATALYTIC CORE OF HUMAN DNA POLYMERASE IOTA WITH DNA (TEMPLATE A)
2FLPA:26-299BINARY COMPLEX OF THE CATALYTIC CORE OF HUMAN DNA POLYMERASE IOTA WITH DNA (TEMPLATE G)
3G6XA:25-299TERNARY COMPLEX OF DNA POLYMERASE IOTA:DNA:DGTP WITH AN ABASIC SITE AT THE TEMPLATING POSITION
3GV5B:28-299; D:26-299HUMAN DNA POLYMERASE IOTA IN COMPLEX WITH T TEMPLATE DNA AND INCOMING DDADP
3GV7B:26-299HUMAN DNA POLYMERASE IOTA IN COMPLEX WITH T TEMPLATE DNA AND INCOMING DTTP
3GV8B:26-299HUMAN DNA POLYMERASE IOTA IN COMPLEX WITH T TEMPLATE DNA AND INCOMING DGTP
3H40A:26-299BINARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH TEMPLATE U/T
3H4BA:25-299TERNARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH TEMPLATE U/T AND INCOMING DATP
3H4DA:25-299TERNARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH TEMPLATE U/T AND INCOMING DGTP
3NGDA:26-299STRUCTURAL BASIS FOR PROFICIENT INCORPORATION OF DTTP OPPOSITE O6-METHYLGUANINE BY HUMAN DNA POLYMERASE IOTA
4EBCA:26-299CONFORMATIONALLY RESTRAINED NORTH-METHANOCARBA-2'-DEOXYADENOSINE CORRECTS THE ERROR-PRONE NATURE OF HUMAN DNA POLYMERASE IOTA
4EBDA:26-299CONFORMATIONALLY RESTRAINED NORTH-METHANOCARBA-2'-DEOXYADENOSINE CORRECTS THE ERROR-PRONE NATURE OF HUMAN DNA POLYMERASE IOTA
4EBEA:26-299CONFORMATIONALLY RESTRAINED NORTH-METHANOCARBA-2'-DEOXYADENOSINE CORRECTS THE ERROR-PRONE NATURE OF HUMAN DNA POLYMERASE IOTA
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Protein domain: DNA polymerase kappa (1)
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Human (Homo sapiens) [TaxId: 9606] (1)
1T94A:75-407; B:75-407CRYSTAL STRUCTURE OF THE CATALYTIC CORE OF HUMAN DNA POLYMERASE KAPPA