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2R5Z
Asym. Unit
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Asym.Unit (47 KB)
Biol.Unit 1 (43 KB)
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(1)
Title
:
STRUCTURE OF SCR/EXD COMPLEX BOUND TO A DNA SEQUENCE DERIVED FROM THE FKH GENE
Authors
:
A. K. Aggarwal, J. M. Passner, R. Jain
Date
:
04 Sep 07 (Deposition) - 05 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Homeodomain, Homeotic Proteins, Specificity, Developmental Protein, Dna-Binding, Homeobox, Nucleus, Transcription, Transcription Regulation, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Joshi, J. M. Passner, R. Rohs, R. Jain, A. Sosinsky, M. A. Crickmore, V. Jacob, A. K. Aggarwal, B. Honig, R. S. Mann
Functional Specificity Of A Hox Protein Mediated By The Recognition Of Minor Groove Structure
Cell(Cambridge, Mass. ) V. 131 530 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(3, 4)
Info
All PROSITE Patterns/Profiles
1: HOMEOBOX_1 (B:234-257,A:134-157)
2: ANTENNAPEDIA (A:81-86)
3: HOMEOBOX_2 (A:103-159)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HOMEOBOX_1
PS00027
'Homeobox' domain signature.
EXD_DROME
274-297
1
B:234-257
SCR_DROME
357-380
1
A:134-157
2
ANTENNAPEDIA
PS00032
'Homeobox' antennapedia-type protein signature.
SCR_DROME
304-309
1
A:81-86
3
HOMEOBOX_2
PS50071
'Homeobox' domain profile.
SCR_DROME
322-382
1
A:103-159
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2r5za_ (A:)
1b: SCOP_d2r5zb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Homeodomain
(93)
Protein domain
:
automated matches
(13)
Fruit fly (Drosophila melanogaster) [TaxId: 7227]
(5)
1a
d2r5za_
A:
1b
d2r5zb_
B:
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CATH Domains
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all CATH domains
1a: CATH_2r5zB00 (B:205-260)
1b: CATH_2r5zA00 (A:75-161)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Fruit fly (Drosophila melanogaster)
(14)
1a
2r5zB00
B:205-260
1b
2r5zA00
A:75-161
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Homeobox_2r5zB01 (B:205-258)
1b: PFAM_Homeobox_2r5zA01 (A:103-158)
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Clan
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HTH
(544)
Family
:
Homeobox
(36)
Drosophila melanogaster (Fruit fly)
(16)
1a
Homeobox-2r5zB01
B:205-258
1b
Homeobox-2r5zA01
A:103-158
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Asymmetric Unit 1
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Asym.Unit (47 KB)
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Header - Biol.Unit 1
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