PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2PYJ
Asym. Unit
Info
Asym.Unit (251 KB)
Biol.Unit 1 (121 KB)
Biol.Unit 2 (118 KB)
Biol.Unit 3 (16 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE DNA AND INCOMING NUCLEOTIDE SUBSTRATES (TERNARY COMPLEX)
Authors
:
A. J. Berman, S. Kamtekar, J. L. Goodman, J. M. Lazaro, M. De Vega, L. Blanco, M. Salas, T. A. Steitz
Date
:
16 May 07 (Deposition) - 17 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A,B,J,K,Q,R,X,Y
Biol. Unit 1: A,X,Y (1x)
Biol. Unit 2: B,Q,R (1x)
Biol. Unit 3: J,K (1x)
Keywords
:
Protein-Dna Complex, Replication, Transferase/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Berman, S. Kamtekar, J. L. Goodman, J. M. Lazaro, M. De Vega, L. Blanco, M. Salas, T. A. Steitz
Structures Of Phi29 Dna Polymerase Complexed With Substrate: The Mechanism Of Translocation In B-Family Polymerases
Embo J. V. 26 3494 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 50)
Info
All Hetero Components
1a: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTa)
1b: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTb)
2a: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSP... (DOCa)
2b: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSP... (DOCb)
2c: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSP... (DOCc)
3a: 1,2-ETHANEDIOL (EDOa)
3aa: 1,2-ETHANEDIOL (EDOaa)
3ab: 1,2-ETHANEDIOL (EDOab)
3ac: 1,2-ETHANEDIOL (EDOac)
3ad: 1,2-ETHANEDIOL (EDOad)
3ae: 1,2-ETHANEDIOL (EDOae)
3af: 1,2-ETHANEDIOL (EDOaf)
3ag: 1,2-ETHANEDIOL (EDOag)
3ah: 1,2-ETHANEDIOL (EDOah)
3ai: 1,2-ETHANEDIOL (EDOai)
3aj: 1,2-ETHANEDIOL (EDOaj)
3ak: 1,2-ETHANEDIOL (EDOak)
3al: 1,2-ETHANEDIOL (EDOal)
3am: 1,2-ETHANEDIOL (EDOam)
3an: 1,2-ETHANEDIOL (EDOan)
3ao: 1,2-ETHANEDIOL (EDOao)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: MANGANESE (II) ION (MNa)
5b: MANGANESE (II) ION (MNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DGT
2
Ligand/Ion
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
2
DOC
3
Mod. Nucleotide
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
3
EDO
41
Ligand/Ion
1,2-ETHANEDIOL
4
MG
2
Ligand/Ion
MAGNESIUM ION
5
MN
2
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(47, 47)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:249 , VAL B:250 , ASP B:458 , DGT B:1589 , MG B:9002
BINDING SITE FOR RESIDUE MN B 9001
02
AC2
SOFTWARE
ASP B:249 , ASP B:458 , DGT B:1589 , MN B:9001 , HOH B:9084 , HOH B:9130 , DOC Q:10
BINDING SITE FOR RESIDUE MG B 9002
03
AC3
SOFTWARE
ASP A:249 , VAL A:250 , ASP A:458 , DGT A:1588 , MG A:9004
BINDING SITE FOR RESIDUE MN A 9003
04
AC4
SOFTWARE
ASP A:249 , ASP A:458 , DGT A:1588 , MN A:9003 , HOH A:9158 , HOH A:9326 , DOC X:10
BINDING SITE FOR RESIDUE MG A 9004
05
AC5
SOFTWARE
ASP A:249 , VAL A:250 , ASN A:251 , SER A:252 , LEU A:253 , TYR A:254 , LYS A:371 , LYS A:383 , ASN A:387 , TYR A:390 , ASP A:458 , MN A:9003 , MG A:9004 , HOH A:9018 , HOH A:9042 , HOH A:9090 , HOH A:9155 , HOH A:9236 , HOH A:9326 , HOH A:9435 , DOC X:10 , DC Y:6 , DG Y:7
BINDING SITE FOR RESIDUE DGT A 1588
06
AC6
SOFTWARE
ASP B:249 , VAL B:250 , ASN B:251 , SER B:252 , LEU B:253 , TYR B:254 , LYS B:371 , LYS B:383 , ASN B:387 , TYR B:390 , THR B:457 , ASP B:458 , EDO B:2775 , MN B:9001 , MG B:9002 , HOH B:9013 , HOH B:9017 , HOH B:9047 , HOH B:9048 , HOH B:9065 , HOH B:9130 , HOH B:9150 , DOC Q:10 , DC R:6 , DG R:7
BINDING SITE FOR RESIDUE DGT B 1589
07
AC7
SOFTWARE
ARG B:491 , ASP B:503 , THR B:542 , PHE B:543 , HOH B:9125
BINDING SITE FOR RESIDUE EDO B 2762
08
AC8
SOFTWARE
ILE B:504 , MET B:506 , GLU B:515 , LYS B:525 , HOH B:9266
BINDING SITE FOR RESIDUE EDO B 2763
09
AC9
SOFTWARE
TYR B:265 , THR B:356
BINDING SITE FOR RESIDUE EDO B 2764
10
BC1
SOFTWARE
DA K:6 , DA K:10 , HOH K:1218
BINDING SITE FOR RESIDUE EDO K 2765
11
BC2
SOFTWARE
DA K:6 , EDO K:2767 , DC R:4
BINDING SITE FOR RESIDUE EDO K 2766
12
BC3
SOFTWARE
ASP B:104 , LYS B:114 , HIS B:116 , DC K:5 , DA K:6 , EDO K:2766 , DC R:4
BINDING SITE FOR RESIDUE EDO K 2767
13
BC4
SOFTWARE
PHE A:309 , THR B:368 , THR B:372 , LYS B:478 , LYS B:479 , LEU B:480 , HOH B:9026 , HOH B:9217 , HOH B:9296
BINDING SITE FOR RESIDUE EDO B 2769
14
BC5
SOFTWARE
GLY A:481 , TYR A:482
BINDING SITE FOR RESIDUE EDO A 2770
15
BC6
SOFTWARE
LYS A:274 , HIS A:284 , GLN A:286 , LEU A:333 , LYS A:337 , TYR A:347
BINDING SITE FOR RESIDUE EDO A 2771
16
BC7
SOFTWARE
LYS A:305 , DA Y:9 , HOH Y:1029 , HOH Y:1030
BINDING SITE FOR RESIDUE EDO Y 2772
17
BC8
SOFTWARE
ARG A:308 , EDO A:2774 , ASP B:365
BINDING SITE FOR RESIDUE EDO A 2773
18
BC9
SOFTWARE
EDO A:2773 , HOH A:9397 , TYR B:369
BINDING SITE FOR RESIDUE EDO A 2774
19
CC1
SOFTWARE
ASN B:251 , LYS B:371 , LYS B:379 , PRO B:477 , DGT B:1589 , HOH B:9008
BINDING SITE FOR RESIDUE EDO B 2775
20
CC2
SOFTWARE
GLY B:376 , LYS B:379
BINDING SITE FOR RESIDUE EDO B 2776
21
CC3
SOFTWARE
HIS A:149 , LYS A:150 , GLU A:151 , GLU B:334 , GLU B:338 , TRP B:436 , TYR B:439
BINDING SITE FOR RESIDUE EDO B 2777
22
CC4
SOFTWARE
ARG B:227 , THR B:301 , ILE B:302 , GLN B:303 , ASP B:332 , ARG B:438 , HOH B:9097 , HOH B:9122
BINDING SITE FOR RESIDUE EDO B 2778
23
CC5
SOFTWARE
GLU A:151 , PRO A:153 , PRO B:282 , HOH B:9287
BINDING SITE FOR RESIDUE EDO B 2779
24
CC6
SOFTWARE
ASN A:62 , PRO A:558 , HOH A:9262
BINDING SITE FOR RESIDUE EDO A 2780
25
CC7
SOFTWARE
ASN A:62 , PRO A:129 , HOH A:9245
BINDING SITE FOR RESIDUE EDO A 2781
26
CC8
SOFTWARE
PHE A:414 , ARG A:415 , LEU A:416 , DT X:4 , DG X:5 , HOH X:834
BINDING SITE FOR RESIDUE EDO X 2782
27
CC9
SOFTWARE
LYS A:206 , LEU A:359 , HOH A:9377
BINDING SITE FOR RESIDUE EDO A 2784
28
DC1
SOFTWARE
DT Q:8 , DA Q:9 , DOC Q:10 , HOH Q:2791 , HOH Q:2796 , HOH Q:2799 , HOH Q:2800
BINDING SITE FOR RESIDUE EDO Q 2785
29
DC2
SOFTWARE
GLN A:380 , LYS A:383 , HOH A:9229 , HOH A:9317
BINDING SITE FOR RESIDUE EDO A 2786
30
DC3
SOFTWARE
MET B:4 , GLU B:291 , HOH B:9324
BINDING SITE FOR RESIDUE EDO B 2787
31
DC4
SOFTWARE
DG Y:14
BINDING SITE FOR RESIDUE EDO Y 2788
32
DC5
SOFTWARE
SER A:551 , GLU B:33 , LYS B:182 , GLU B:296 , HOH B:9277
BINDING SITE FOR RESIDUE EDO B 2789
33
DC6
SOFTWARE
ARG A:552 , MET A:554 , EDO A:2803 , ASP B:34 , GLU B:296
BINDING SITE FOR RESIDUE EDO A 2790
34
DC7
SOFTWARE
TYR B:29 , SER B:36 , TYR B:38
BINDING SITE FOR RESIDUE EDO B 2791
35
DC8
SOFTWARE
LYS A:143 , ILE A:323 , HOH A:9123 , HOH A:9291
BINDING SITE FOR RESIDUE EDO A 2792
36
DC9
SOFTWARE
GLN A:183 , LYS A:366
BINDING SITE FOR RESIDUE EDO A 2793
37
EC1
SOFTWARE
GLN A:257 , THR A:440 , GLY A:481 , HOH A:9110 , HOH A:9142
BINDING SITE FOR RESIDUE EDO A 2794
38
EC2
SOFTWARE
HOH B:9202
BINDING SITE FOR RESIDUE EDO B 2795
39
EC3
SOFTWARE
ARG B:496 , LYS B:575 , DG R:11 , DC R:12
BINDING SITE FOR RESIDUE EDO R 2796
40
EC4
SOFTWARE
LYS A:64 , GLY A:98 , TRP A:100 , LYS A:402 , PHE A:414 , HOH A:9197 , DG X:5 , DC X:6
BINDING SITE FOR RESIDUE EDO A 2797
41
EC5
SOFTWARE
PHE A:414 , GLN A:560 , HOH A:9306 , DG X:5 , DC X:6 , HOH X:1053
BINDING SITE FOR RESIDUE EDO X 2798
42
EC6
SOFTWARE
LYS A:64 , MET A:97 , DC X:6 , DT X:7
BINDING SITE FOR RESIDUE EDO A 2800
43
EC7
SOFTWARE
GLY A:41 , ASN A:42 , GLU A:46
BINDING SITE FOR RESIDUE EDO A 2801
44
EC8
SOFTWARE
PHE A:309 , TYR A:310 , SER A:319 , GLY A:320 , THR B:372 , LYS B:478
BINDING SITE FOR RESIDUE EDO B 2802
45
EC9
SOFTWARE
GLY A:549 , PHE A:550 , SER A:551 , ARG A:552 , EDO A:2790 , HOH A:9198 , GLU B:33 , ASP B:34 , HIS B:35
BINDING SITE FOR RESIDUE EDO A 2803
46
FC1
SOFTWARE
THR A:92 , ILE A:93 , ILE A:94 , GLY A:401 , LYS A:402 , HOH A:9271
BINDING SITE FOR RESIDUE EDO A 2804
47
FC2
SOFTWARE
LYS A:150 , SER B:260 , ARG B:261 , HOH B:9037
BINDING SITE FOR RESIDUE EDO B 2805
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DPOL_BPPH2_001 (A176R, chain A/B, )
2: VAR_DPOL_BPPH2_002 (A355V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DPOL_BPPH2_001
*
A
176
R
DPOL_BPPH2
---
---
A/B
A
176
R
2
UniProt
VAR_DPOL_BPPH2_002
*
A
355
V
DPOL_BPPH2
---
---
A/B
A
355
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DNA_POLYMERASE_B (A:454-462,B:454-462)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_POLYMERASE_B
PS00116
DNA polymerase family B signature.
DPOL_BPPH2
454-462
2
A:454-462
B:454-462
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2pyja1 (A:5-187)
1b: SCOP_d2pyjb1 (B:3-187)
2a: SCOP_d2pyja2 (A:188-575)
2b: SCOP_d2pyjb2 (B:188-575)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
DnaQ-like 3'-5' exonuclease
(253)
Protein domain
:
Exonuclease domain of phi29 DNA polymerase
(8)
Bacteriophage phi-29 [TaxId: 10756]
(8)
1a
d2pyja1
A:5-187
1b
d2pyjb1
B:3-187
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
DNA polymerase I
(233)
Protein domain
:
phi29 DNA polymerase
(8)
Bacteriophage phi-29 [TaxId: 10756]
(8)
2a
d2pyja2
A:188-575
2b
d2pyjb2
B:188-575
[
close SCOP info
]
CATH Domains
(6, 12)
Info
all CATH domains
1a: CATH_2pyjA01 (A:5-188)
1b: CATH_2pyjB01 (B:3-188)
2a: CATH_2pyjA03 (A:262-359)
2b: CATH_2pyjB03 (B:262-359)
3a: CATH_2pyjB02 (B:189-261,B:426-531)
3b: CATH_2pyjA02 (A:189-261,A:426-531)
4a: CATH_2pyjA05 (A:396-425)
4b: CATH_2pyjB05 (B:396-425)
5a: CATH_2pyjA06 (A:532-575)
5b: CATH_2pyjB06 (B:532-575)
6a: CATH_2pyjA04 (A:360-395)
6b: CATH_2pyjB04 (B:360-395)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
[unclassified]
(102)
1a
2pyjA01
A:5-188
1b
2pyjB01
B:3-188
Topology
:
TPR 1 domain of DNA polymerase
(8)
Homologous Superfamily
:
TPR 1 domain of DNA polymerase
(8)
[unclassified]
(6)
2a
2pyjA03
A:262-359
2b
2pyjB03
B:262-359
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Palm domain of DNA polymerase
(8)
Homologous Superfamily
:
Palm domain of DNA polymerase
(8)
[unclassified]
(6)
3a
2pyjB02
B:189-261,B:426-531
3b
2pyjA02
A:189-261,A:426-531
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Rhinovirus 14, subunit 4
(101)
Homologous Superfamily
:
DNA polymerase; domain 5
(8)
[unclassified]
(6)
4a
2pyjA05
A:396-425
4b
2pyjB05
B:396-425
Homologous Superfamily
:
DNA polymerase; domain 6
(10)
[unclassified]
(6)
5a
2pyjA06
A:532-575
5b
2pyjB06
B:532-575
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix hairpin bin
(10)
[unclassified]
(7)
6a
2pyjA04
A:360-395
6b
2pyjB04
B:360-395
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DNA_pol_B_2_2pyjB01 (B:49-488)
1b: PFAM_DNA_pol_B_2_2pyjB02 (B:49-488)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
DNA_pol_B-like
(44)
Family
:
DNA_pol_B_2
(6)
Bacillus phage phi29 (Bacteriophage phi-29)
(6)
1a
DNA_pol_B_2-2pyjB01
B:49-488
1b
DNA_pol_B_2-2pyjB02
B:49-488
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain J
Chain K
Chain Q
Chain R
Chain X
Chain Y
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (251 KB)
Header - Asym.Unit
Biol.Unit 1 (121 KB)
Header - Biol.Unit 1
Biol.Unit 2 (118 KB)
Header - Biol.Unit 2
Biol.Unit 3 (16 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2PYJ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
