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2OM7
Biol. Unit 1
Info
Asym.Unit (337 KB)
Biol.Unit 1 (329 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR INTERACTION OF THE RIBOSOME WITH THE SWITCH REGIONS OF GTP-BOUND ELONGATION FACTORS
Authors
:
S. R. Connell, D. N. Wilson, M. Rost, M. Schueler, J. Giesebrecht, M. Dab T. Mielke, P. Fucini, C. M. T. Spahn
Date
:
21 Jan 07 (Deposition) - 15 Jan 08 (Release) - 12 Mar 14 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
7.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Keywords
:
Rna-Protein Complex, Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. R. Connell, C. Takemoto, D. N. Wilson, H. Wang, K. Murayama, T. Terada, M. Shirouzu, M. Rost, M. Schuler, J. Giesebrecht, M. Dabrowski, T. Mielke, P. Fucini, S. Yokoyama, C. M. Spahn
Structural Basis For Interaction Of The Ribosome With The Switch Regions Of Gtp-Bound Elongation Factors.
Mol. Cell V. 25 751 2007
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Hetero Components
(5, 6)
Info
All Hetero Components
1a: 4-THIOURIDINE-5'-MONOPHOSPHATE (4SUa)
2a: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCa)
3a: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUa)
4a: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ua)
4b: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ub)
5a: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
4SU
1
Mod. Nucleotide
4-THIOURIDINE-5'-MONOPHOSPHATE
2
5MC
1
Mod. Nucleotide
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
3
5MU
1
Mod. Nucleotide
5-METHYLURIDINE 5'-MONOPHOSPHATE
4
H2U
2
Mod. Nucleotide
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
5
PSU
1
Mod. Nucleotide
PSEUDOURIDINE-5'-MONOPHOSPHATE
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_RS12_THETH_001 (P45S, chain E, )
2: VAR_RS12_THETH_002 (K46R, chain E, )
3: VAR_RS12_THETH_003 (R89C, chain E, )
4: VAR_RS12_THETH_004 (R89H, chain E, )
5: VAR_RS12_THETH_005 (K91E, chain E, )
6: VAR_RS12_THETH_006 (K91R, chain E, )
7: VAR_RS12_THETH_007 (P94L, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_RS12_THETH_001
*
P
42
S
RS12_THETH
---
---
E
P
45
S
2
UniProt
VAR_RS12_THETH_002
*
K
43
R
RS12_THETH
---
---
E
K
46
R
3
UniProt
VAR_RS12_THETH_003
*
R
86
C
RS12_THETH
---
---
E
R
89
C
4
UniProt
VAR_RS12_THETH_004
*
R
86
H
RS12_THETH
---
---
E
R
89
H
5
UniProt
VAR_RS12_THETH_005
*
K
88
E
RS12_THETH
---
---
E
K
91
E
6
UniProt
VAR_RS12_THETH_006
*
K
88
R
RS12_THETH
---
---
E
K
91
R
7
UniProt
VAR_RS12_THETH_007
*
P
91
L
RS12_THETH
---
---
E
P
94
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_S2_1 (N:7-18)
2: RIBOSOMAL_S12 (E:46-53)
3: G_TR_1 (L:68-68)
4: RIBOSOMAL_L1 (K:120-139)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_S2_1
PS00962
Ribosomal protein S2 signature 1.
RS2_THET8
7-18
1
N:7-18
2
RIBOSOMAL_S12
PS00055
Ribosomal protein S12 signature.
RS12_THETH
43-50
1
E:46-53
3
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EFG_THETH
53-68
1
L:68-68
4
RIBOSOMAL_L1
PS01199
Ribosomal protein L1 signature.
RL1_THET8
121-140
1
K:120-139
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2om7n1 (N:7-241)
2a: SCOP_d2om7e1 (E:5-128)
3a: SCOP_d2om7k1 (K:18-224)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Ribosomal protein S2
(74)
Family
:
Ribosomal protein S2
(74)
Protein domain
:
Ribosomal protein S2
(74)
Thermus thermophilus [TaxId: 274]
(46)
1a
d2om7n1
N:7-241
Class
:
Low resolution protein structures
(283)
Fold
:
Ribosome and ribosomal fragments
(154)
Superfamily
:
Ribosome and ribosomal fragments
(154)
Family
:
Ribosome complexes
(103)
Protein domain
:
70S ribosome functional complex
(103)
Thermus thermophilus [TaxId: 274]
(20)
2a
d2om7e1
E:5-128
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Ribosomal protein L1
(18)
Superfamily
:
Ribosomal protein L1
(18)
Family
:
Ribosomal protein L1
(18)
Protein domain
:
Ribosomal protein L1
(18)
Thermus thermophilus [TaxId: 274]
(13)
3a
d2om7k1
K:18-224
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(7, 7)
Info
all PFAM domains
1a: PFAM_EFG_C_2om7L01 (L:600-687)
2a: PFAM_Ribosomal_S12_2om7E01 (E:5-126)
3a: PFAM_GTP_EFTU_2om7L02 (L:10-282)
4a: PFAM_Ribosomal_L1_2om7K01 (K:18-221)
5a: PFAM_EFG_IV_2om7L03 (L:479-598)
6a: PFAM_GTP_EFTU_D2_2om7L04 (L:323-390)
7a: PFAM_Ribosomal_S2_2om7N01 (N:10-226)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EF-G_C
(20)
Family
:
EFG_C
(14)
Thermus thermophilus
(1)
1a
EFG_C-2om7L01
L:600-687
Clan
:
OB
(224)
Family
:
Ribosomal_S12
(18)
Thermus thermophilus
(2)
2a
Ribosomal_S12-2om7E01
E:5-126
Clan
:
P-loop_NTPase
(1112)
Family
:
GTP_EFTU
(39)
Thermus thermophilus
(1)
3a
GTP_EFTU-2om7L02
L:10-282
Clan
:
Ribosome_L1
(7)
Family
:
Ribosomal_L1
(7)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(1)
4a
Ribosomal_L1-2om7K01
K:18-221
Clan
:
S5
(103)
Family
:
EFG_IV
(11)
Thermus thermophilus
(1)
5a
EFG_IV-2om7L03
L:479-598
Clan
:
no clan defined [family: GTP_EFTU_D2]
(39)
Family
:
GTP_EFTU_D2
(39)
Thermus thermophilus
(1)
6a
GTP_EFTU_D2-2om7L04
L:323-390
Clan
:
no clan defined [family: Ribosomal_S2]
(18)
Family
:
Ribosomal_S2
(18)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(17)
7a
Ribosomal_S2-2om7N01
N:10-226
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Asym.Unit (337 KB)
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