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2LFB
Asym. Unit
Info
Asym.Unit (558 KB)
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Models
(20 )
Title
:
HOMEODOMAIN FROM RAT LIVER LFB1/HNF1 TRANSCRIPTION FACTOR, NMR, 20 STRUCTURES
Authors
:
O. Schott, M. Billeter, B. Leiting, G. Wider, K. Wuthrich
Date
:
12 Dec 96 (Deposition) - 12 Mar 97 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Dna-Binding, Transcription Factor, Lfb1/Hnf1, Helix-Turn- Helix, Dna-Binding Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Schott, M. Billeter, B. Leiting, G. Wider, K. Wuthrich
The Nmr Solution Structure Of The Non-Classical Homeodomain From The Rat Liver Lfb1/Hnf1 Transcription Factor.
J. Mol. Biol. V. 267 673 1997
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(1, 1)
Info
All Sites
1: S1 (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
S1
UNKNOWN
ASN A:76 , LYS A:83
DNA-BINDING.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: HOMEOBOX_2 (A:7-88)
2: HOMEOBOX_1 (A:63-86)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HOMEOBOX_2
PS50071
'Homeobox' domain profile.
HNF1A_RAT
197-278
1
A:7-88
2
HOMEOBOX_1
PS00027
'Homeobox' domain signature.
HNF1A_RAT
253-276
1
A:63-86
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Exons
(3, 3)
Info
All Exons
Exon 1.2 (A:0-4 (gaps))
Exon 1.3 (A:5-48)
Exon 1.4 (A:48-99 (gaps))
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000001565
1
ENSRNOE00000010408
chr12:
42919574-42920049
476
HNF1A_RAT
1-109
109
0
-
-
1.2
ENSRNOT00000001565
2
ENSRNOE00000010410
chr12:
42931019-42931218
200
HNF1A_RAT
109-176
68
1
A:0-4 (gaps)
18
1.3
ENSRNOT00000001565
3
ENSRNOE00000010412
chr12:
42936591-42936777
187
HNF1A_RAT
176-238
63
1
A:5-48
44
1.4
ENSRNOT00000001565
4
ENSRNOE00000010414
chr12:
42937133-42937374
242
HNF1A_RAT
238-319
82
1
A:48-99 (gaps)
81
1.5
ENSRNOT00000001565
5
ENSRNOE00000010415
chr12:
42938570-42938718
149
HNF1A_RAT
319-368
50
0
-
-
1.6
ENSRNOT00000001565
6
ENSRNOE00000010416
chr12:
42938824-42939025
202
HNF1A_RAT
369-436
68
0
-
-
1.7
ENSRNOT00000001565
7
ENSRNOE00000010417
chr12:
42940056-42940247
192
HNF1A_RAT
436-500
65
0
-
-
1.8
ENSRNOT00000001565
8
ENSRNOE00000010419
chr12:
42941725-42941843
119
HNF1A_RAT
500-539
40
0
-
-
1.9
ENSRNOT00000001565
9
ENSRNOE00000010422
chr12:
42941931-42942075
145
HNF1A_RAT
540-588
49
0
-
-
1.10
ENSRNOT00000001565
10
ENSRNOE00000010425
chr12:
42944045-42945670
1626
HNF1A_RAT
588-628
41
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2lfba_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Homeodomain
(93)
Protein domain
:
Hepatocyte nuclear factor 1a (LFB1/HNF1)
(3)
Rat (Rattus rattus) [TaxId: 10117]
(2)
1a
d2lfba_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2lfbA00 (A:0-99)
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)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Black rat (Rattus rattus)
(1)
1a
2lfbA00
A:0-99
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Homeobox_2lfbA01 (A:10-85)
2a: PFAM_HNF_1B_C_2lfbA02 (A:92-96)
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Clans
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Clan
:
HTH
(544)
Family
:
Homeobox
(36)
Rattus norvegicus (Rat)
(2)
1a
Homeobox-2lfbA01
A:10-85
Clan
:
no clan defined [family: HNF-1B_C]
(1)
Family
:
HNF-1B_C
(1)
Rattus norvegicus (Rat)
(1)
2a
HNF-1B_C-2lfbA02
A:92-96
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Chain A
Asymmetric Unit 1
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