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2DTZ
Asym. Unit
Info
Asym.Unit (130 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MULTIDRUG BINDING PROTEIN QACR FROM STAPHYLOCOCCUS AUREUS COCRYSTALLIZED WITH COMPOUND DB75
Authors
:
B. E. Brooks, R. G. Brennan
Date
:
19 Jul 06 (Deposition) - 17 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Keywords
:
Multidrug Recognition, Db75, Qacr, Multidrug Binding Protein, Transcription
(Keyword Search:
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Reference
:
B. E. Brooks, K. M. Piro, R. G. Brennan
Multidrug-Binding Transcription Factor Qacr Binds The Bivalent Aromatic Diamidines Db75 And Db359 In Multiple Positions
J. Am. Chem. Soc. V. 129 8389 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
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No.
Name
Count
Type
Full Name
1
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:2 , LEU A:3 , LYS A:4 , ASN A:38 , HIS A:42
BINDING SITE FOR RESIDUE SO4 A 503
2
AC2
SOFTWARE
LYS A:4 , HIS A:42
BINDING SITE FOR RESIDUE SO4 A 504
3
AC3
SOFTWARE
ARG E:76 , TYR E:80 , GLN E:180
BINDING SITE FOR RESIDUE SO4 A 506
4
AC4
SOFTWARE
HIS A:128 , LYS A:132
BINDING SITE FOR RESIDUE SO4 A 507
5
AC5
SOFTWARE
THR E:24 , THR E:25 , GLY E:26 , LYS E:36
BINDING SITE FOR RESIDUE SO4 E 512
6
AC6
SOFTWARE
LYS E:36 , TYR E:40 , THR E:45 , LYS E:46 , GLU E:47
BINDING SITE FOR RESIDUE SO4 E 514
7
AC7
SOFTWARE
HIS E:128 , LYS E:132
BINDING SITE FOR RESIDUE SO4 E 515
8
AC8
SOFTWARE
SER D:141 , SER D:187
BINDING SITE FOR RESIDUE SO4 D 516
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HTH_TETR_1 (A:19-49,B:19-49,D:19-49,E:19-49)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_TETR_1
PS01081
TetR-type HTH domain signature.
QACR_STAAU
19-49
4
A:19-49
B:19-49
D:19-49
E:19-49
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2dtza1 (A:2-72)
1b: SCOP_d2dtzb1 (B:2-72)
1c: SCOP_d2dtzd1 (D:2-72)
1d: SCOP_d2dtze1 (E:2-72)
2a: SCOP_d2dtza2 (A:73-187)
2b: SCOP_d2dtzb2 (B:73-187)
2c: SCOP_d2dtzd2 (D:73-187)
2d: SCOP_d2dtze2 (E:73-187)
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Protein Domains
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)
Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Tetracyclin repressor-like, N-terminal domain
(97)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
1a
d2dtza1
A:2-72
1b
d2dtzb1
B:2-72
1c
d2dtzd1
D:2-72
1d
d2dtze1
E:2-72
Fold
:
Tetracyclin repressor-like, C-terminal domain
(116)
Superfamily
:
Tetracyclin repressor-like, C-terminal domain
(116)
Family
:
Tetracyclin repressor-like, C-terminal domain
(114)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
2a
d2dtza2
A:73-187
2b
d2dtzb2
B:73-187
2c
d2dtzd2
D:73-187
2d
d2dtze2
E:73-187
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2dtzA01 (A:2-50)
1b: CATH_2dtzB01 (B:2-50)
1c: CATH_2dtzD01 (D:2-50)
1d: CATH_2dtzE01 (E:2-50)
2a: CATH_2dtzA02 (A:51-187)
2b: CATH_2dtzD02 (D:51-187)
2c: CATH_2dtzE02 (E:51-187)
2d: CATH_2dtzB02 (B:51-187)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Staphylococcus aureus. Organism_taxid: 1280.
(8)
1a
2dtzA01
A:2-50
1b
2dtzB01
B:2-50
1c
2dtzD01
D:2-50
1d
2dtzE01
E:2-50
Topology
:
Tetracycline Repressor; domain 2
(126)
Homologous Superfamily
:
Tetracycline Repressor, domain 2
(124)
Staphylococcus aureus. Organism_taxid: 1280.
(7)
2a
2dtzA02
A:51-187
2b
2dtzD02
D:51-187
2c
2dtzE02
E:51-187
2d
2dtzB02
B:51-187
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (130 KB)
Header - Asym.Unit
Biol.Unit 1 (63 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
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