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2BQ3
Asym. Unit
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Asym.Unit (80 KB)
Biol.Unit 1 (74 KB)
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(1)
Title
:
DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1,N2-ETHENOGUANINE
Authors
:
A. Irimia, L. V. Loukachevitch, M. Egli
Date
:
27 Apr 05 (Deposition) - 22 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,P,T
Biol. Unit 1: A,P,T (1x)
Keywords
:
P2 Dna Polymerase Iv, 1N2-Ethenoguanine Adduct, Translesion Dna Polymerase, Nucleotidyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Zang, A. K. Goodenough, J. Y. Choi, A. Irimia, L. V. Loukachevitch, I. D. Kozekov, K. C. Angel, C. J. Rizzo, M. Egli, F. P. Guengerich
Dna Adduct Bypass Polymerization By Sulfolobus Solfataricus Dna Polymerase Dpo4: Analysis And Crystal Structures Of Multiple Base Pair Substitution And Frameshift Products With The Adduct 1, N2-Ethenoguanine.
J. Biol. Chem. V. 280 29750 2005
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: 1,N2-ETHENOGUANINE (GNEa)
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No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
GNE
1
Mod. Nucleotide
1,N2-ETHENOGUANINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:7 , ASP A:105 , GLU A:106 , HOH A:2065 , DA P:14
BINDING SITE FOR RESIDUE CA A2001
2
AC2
SOFTWARE
ASP A:7 , PHE A:8 , PHE A:11 , ASP A:105
BINDING SITE FOR RESIDUE CA A2002
3
AC3
SOFTWARE
ALA A:181 , ILE A:186 , HOH A:2072 , HOH P:2006 , HOH P:2020 , HOH P:2021
BINDING SITE FOR RESIDUE CA A2003
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: UMUC (A:3-187)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UMUC
PS50173
UmuC domain profile.
DPO4_SULSO
3-187
1
A:3-187
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2bq3a1 (A:241-342)
2a: SCOP_d2bq3a2 (A:1-240)
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Protein Domains
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)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Superfamily
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Family
:
automated matches
(41)
Protein domain
:
automated matches
(41)
Sulfolobus solfataricus [TaxId: 273057]
(31)
1a
d2bq3a1
A:241-342
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Lesion bypass DNA polymerase (Y-family), catalytic domain
(104)
Protein domain
:
DinB homolog (DBH)
(46)
Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]
(40)
2a
d2bq3a2
A:1-240
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2bq3A01 (A:2-10,A:78-166)
2a: CATH_2bq3A04 (A:244-336)
3a: CATH_2bq3A03 (A:167-233)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
Sulfolobus fataricus (Sulfolobus solfataricus)
(3)
1a
2bq3A01
A:2-10,A:78-166
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
[code=3.30.1490.100, no name defined]
(80)
Sulfolobus fataricus (Sulfolobus solfataricus)
(3)
2a
2bq3A04
A:244-336
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
5' to 3' exonuclease, C-terminal subdomain
(384)
Sulfolobus fataricus (Sulfolobus solfataricus)
(3)
3a
2bq3A03
A:167-233
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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