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2AU0
Biol. Unit 2
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Asym.Unit (141 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (68 KB)
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(1)
Title
:
UNMODIFIED PREINSERTION BINARY COMPLEX
Authors
:
O. Rechkoblit, L. Malinina, Y. Cheng, V. Kuryavyi, S. Broyde, N. E. Geac D. J. Patel
Date
:
26 Aug 05 (Deposition) - 10 Jan 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,D,E,H,J
Biol. Unit 1: A,D,E (1x)
Biol. Unit 2: B,H,J (1x)
Keywords
:
Dna Polymerase, Y-Family, Lesion Bypass, Binary Complex, Transferase- Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
O. Rechkoblit, L. Malinina, Y. Cheng, V. Kuryavyi, S. Broyde, N. E. Geacintov, D. J. Patel
Stepwise Translocation Of Dpo4 Polymerase During Error-Free Bypass Of An Oxog Lesion
Plos Biol. V. 4 1 2006
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHO... (DDGa)
2b: 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHO... (DDGb)
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
DDG
1
Mod. Nucleotide
2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
GLU B:1106 , HOH B:1502 , HOH B:1503 , DDG H:1813
BINDING SITE FOR RESIDUE CA H 1415
2
AC3
SOFTWARE
HOH H:1506 , HOH H:1507 , HOH J:1505 , HOH J:1508
BINDING SITE FOR RESIDUE CA J 1416
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: UMUC (B:1003-1187)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UMUC
PS50173
UmuC domain profile.
DPO4_SULSO
3-187
1
-
B:1003-1187
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2au0a1 (A:241-341)
1b: SCOP_d2au0b1 (B:1241-1341)
2a: SCOP_d2au0a2 (A:1-240)
2b: SCOP_d2au0b2 (B:1001-1240)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Superfamily
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Family
:
automated matches
(41)
Protein domain
:
automated matches
(41)
Sulfolobus solfataricus [TaxId: 2287]
(2)
1a
d2au0a1
A:241-341
1b
d2au0b1
B:1241-1341
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Lesion bypass DNA polymerase (Y-family), catalytic domain
(104)
Protein domain
:
automated matches
(35)
Sulfolobus solfataricus [TaxId: 2287]
(2)
2a
d2au0a2
A:1-240
2b
d2au0b2
B:1001-1240
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2au0A01 (A:2-10,A:78-166)
1b: CATH_2au0B01 (B:1002-1010,B:1078-1166)
2a: CATH_2au0A04 (A:244-336)
2b: CATH_2au0B04 (B:1244-1336)
3a: CATH_2au0A03 (A:167-233)
3b: CATH_2au0B03 (B:1167-1233)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
[unclassified]
(58)
1a
2au0A01
A:2-10,A:78-166
1b
2au0B01
B:1002-1010,B:1078-1166
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
[code=3.30.1490.100, no name defined]
(80)
[unclassified]
(29)
2a
2au0A04
A:244-336
2b
2au0B04
B:1244-1336
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
5' to 3' exonuclease, C-terminal subdomain
(384)
[unclassified]
(230)
3a
2au0A03
A:167-233
3b
2au0B03
B:1167-1233
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
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