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2ASL
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (71 KB)
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(1)
Title
:
OXOG-MODIFIED POSTINSERTION BINARY COMPLEX
Authors
:
O. Rechkoblit, L. Malinina, Y. Cheng, V. Kuryavyi, S. Broyde, N. E. Geac D. J. Patel
Date
:
23 Aug 05 (Deposition) - 10 Jan 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,D,E,H,J
Biol. Unit 1: A,D,E (1x)
Biol. Unit 2: B,H,J (1x)
Keywords
:
Dna Polymerase, 8-Oxoguanine, Y-Family, Lesion Bypass, Transferase- Dna Complex
(Keyword Search:
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Reference
:
O. Rechkoblit, L. Malinina, Y. Cheng, V. Kuryavyi, S. Broyde, N. E. Geacintov, D. J. Patel
Stepwise Translocation Of Dpo4 Polymerase During Error-Free Bypass Of An Oxog Lesion
Plos Biol. V. 4 1 2006
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPH... (8OGa)
1b: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPH... (8OGb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSP... (DOCa)
3b: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSP... (DOCb)
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Label:
No.
Name
Count
Type
Full Name
1
8OG
2
Mod. Nucleotide
8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
2
CA
4
Ligand/Ion
CALCIUM ION
3
DOC
2
Mod. Nucleotide
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:7 , ASP A:105 , HOH A:501 , HOH A:502 , HOH A:503 , HOH A:537 , HOH A:547 , DOC D:814
BINDING SITE FOR RESIDUE CA A 415
2
AC2
SOFTWARE
HOH D:505 , HOH D:506 , HOH D:509 , HOH E:504 , HOH E:507 , HOH E:508
BINDING SITE FOR RESIDUE CA D 416
3
AC3
SOFTWARE
ASP B:1007 , ASP B:1105 , GLU B:1106 , HOH B:1501 , HOH B:1503 , DOC H:1814
BINDING SITE FOR RESIDUE CA B 1415
4
AC4
SOFTWARE
HOH H:1504 , HOH H:1508 , HOH H:1509 , HOH J:1507
BINDING SITE FOR RESIDUE CA J 1416
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: UMUC (A:3-187,B:1003-1187)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UMUC
PS50173
UmuC domain profile.
DPO4_SULSO
3-187
2
A:3-187
B:1003-1187
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2asla1 (A:241-341)
1b: SCOP_d2aslb1 (B:1241-1341)
2a: SCOP_d2asla2 (A:1-240)
2b: SCOP_d2aslb2 (B:1001-1240)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Superfamily
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Family
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(62)
Protein domain
:
DinB homolog (DBH)
(39)
Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]
(34)
1a
d2asla1
A:241-341
1b
d2aslb1
B:1241-1341
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Lesion bypass DNA polymerase (Y-family), catalytic domain
(104)
Protein domain
:
DinB homolog (DBH)
(46)
Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]
(40)
2a
d2asla2
A:1-240
2b
d2aslb2
B:1001-1240
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2aslA01 (A:2-10,A:78-166)
1b: CATH_2aslB01 (B:1002-1010,B:1078-1166)
2a: CATH_2aslA04 (A:244-336)
2b: CATH_2aslB04 (B:1244-1336)
3a: CATH_2aslA03 (A:167-233)
3b: CATH_2aslB03 (B:1167-1233)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
[unclassified]
(58)
1a
2aslA01
A:2-10,A:78-166
1b
2aslB01
B:1002-1010,B:1078-1166
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
[code=3.30.1490.100, no name defined]
(80)
[unclassified]
(29)
2a
2aslA04
A:244-336
2b
2aslB04
B:1244-1336
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
5' to 3' exonuclease, C-terminal subdomain
(384)
[unclassified]
(230)
3a
2aslA03
A:167-233
3b
2aslB03
B:1167-1233
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (146 KB)
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Header - Biol.Unit 1
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