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2ALZ
Biol. Unit 1
Info
Asym.Unit (78 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
TERNARY COMPLEX OF HPOLI WITH DNA AND DCTP
Authors
:
D. T. Nair, R. E. Johnson, L. Prakash, S. Prakash, A. K. Aggarwal
Date
:
08 Aug 05 (Deposition) - 25 Oct 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,P,T
Biol. Unit 1: A,P,T (2x)
Keywords
:
Right Handed, Dna Polymerase, Ternary Complex, Template G. Incoming Dctp, Hoogsteen Base Pair, Transferase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
D. T. Nair, R. E. Johnson, L. Prakash, S. Prakash, A. K. Aggarwal
Human Dna Polymerase Iota Incorporates Dctp Opposite Template G Via A G. C+ Hoogsteen Base Pair.
Structure V. 13 1569 2005
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE (DCPa)
2a: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSP... (DOCa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DCP
2
Ligand/Ion
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
2
DOC
2
Mod. Nucleotide
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:34 , ASP A:126 , GLU A:127 , MG A:871 , DCP A:875 , DOC P:873
BINDING SITE FOR RESIDUE MG A 872
2
AC2
SOFTWARE
ASP A:34 , LEU A:35 , ASP A:126 , MG A:872 , DCP A:875
BINDING SITE FOR RESIDUE MG A 871
3
AC3
SOFTWARE
ASP A:34 , LEU A:35 , ASP A:36 , CYS A:37 , PHE A:38 , TYR A:39 , VAL A:64 , THR A:65 , TYR A:68 , ARG A:71 , LYS A:77 , ASP A:126 , LYS A:214 , MG A:871 , MG A:872 , HOH A:908 , HOH A:923 , DOC P:873 , DG T:840 , DG T:841 , HOH T:903
BINDING SITE FOR RESIDUE DCP A 875
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_021239 (R71G, chain A, )
2: VAR_021240 (I236M, chain A, )
3: VAR_021241 (E251K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021239
R
96
G
POLI_HUMAN
Polymorphism
3218778
A
R
71
G
2
UniProt
VAR_021240
I
261
M
POLI_HUMAN
Polymorphism
3218784
A
I
236
M
3
UniProt
VAR_021241
E
276
K
POLI_HUMAN
Polymorphism
3218783
A
E
251
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: UMUC (A:30-243)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UMUC
PS50173
UmuC domain profile.
POLI_HUMAN
55-268
2
A:30-243
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2alza1 (A:300-414)
2a: SCOP_d2alza2 (A:25-299)
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Classes
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(
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Folds
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)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Superfamily
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Family
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(62)
Protein domain
:
DNA polymerase iota
(19)
Human (Homo sapiens) [TaxId: 9606]
(19)
1a
d2alza1
A:300-414
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Lesion bypass DNA polymerase (Y-family), catalytic domain
(104)
Protein domain
:
DNA polymerase iota
(19)
Human (Homo sapiens) [TaxId: 9606]
(19)
2a
d2alza2
A:25-299
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2alzA01 (A:25-36,A:99-221)
2a: CATH_2alzA04 (A:299-414)
3a: CATH_2alzA03 (A:222-298)
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)
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)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
[unclassified]
(58)
1a
2alzA01
A:25-36,A:99-221
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
[code=3.30.1490.100, no name defined]
(80)
[unclassified]
(29)
2a
2alzA04
A:299-414
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
5' to 3' exonuclease, C-terminal subdomain
(384)
[unclassified]
(230)
3a
2alzA03
A:222-298
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (78 KB)
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