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1X2N
Asym. Unit
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Asym.Unit (385 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE HOMEOBOX DOMAIN OF HUMAN HOMEOBOX PROTEIN PKNOX1
Authors
:
Y. O. Kamatari, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
26 Apr 05 (Deposition) - 26 Oct 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Homeobox Domain, Human Homeobox Protein Pknox1, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. O. Kamatari, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Pknox1
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_036440 (V13I, chain A, )
2: VAR_PKNX1_HUMAN_CCDS13692_1_01 (V13I, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036440
V
265
I
PKNX1_HUMAN
Unclassified
---
A
V
13
I
2
CancerSNP
VAR_PKNX1_HUMAN_CCDS13692_1_01
*
V
265
I
PKNX1_HUMAN
Disease (Colorectal cancer)
---
A
V
13
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HOMEOBOX_2 (A:6-67)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HOMEOBOX_2
PS50071
'Homeobox' domain profile.
PKNX1_HUMAN
257-320
1
A:6-67
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Exons
(4, 4)
Info
All Exons
Exon 1.5 (A:1-5)
Exon 1.8b (A:6-31)
Exon 1.9 (A:32-57)
Exon 1.10b (A:57-73 (gaps))
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6a
3: Boundary 1.7/1.8b
4: Boundary 1.8b/1.9
5: Boundary 1.9/1.10b
6: Boundary 1.10b/1.11a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000291547
1a
ENSE00001860427
chr21:
44394620-44394774
155
PKNX1_HUMAN
-
0
0
-
-
1.2
ENST00000291547
2
ENSE00002153862
chr21:
44424436-44424542
107
PKNX1_HUMAN
1-17
17
0
-
-
1.3
ENST00000291547
3
ENSE00001050485
chr21:
44427601-44427728
128
PKNX1_HUMAN
18-60
43
0
-
-
1.4
ENST00000291547
4
ENSE00001050478
chr21:
44430163-44430334
172
PKNX1_HUMAN
60-117
58
0
-
-
1.5
ENST00000291547
5
ENSE00001050481
chr21:
44433178-44433348
171
PKNX1_HUMAN
118-174
57
1
A:1-5
5
1.6a
ENST00000291547
6a
ENSE00001050484
chr21:
44437018-44437117
100
PKNX1_HUMAN
175-208
34
0
-
-
1.7
ENST00000291547
7
ENSE00001050476
chr21:
44438243-44438340
98
PKNX1_HUMAN
208-240
33
0
-
-
1.8b
ENST00000291547
8b
ENSE00001050480
chr21:
44441413-44441541
129
PKNX1_HUMAN
241-283
43
1
A:6-31
26
1.9
ENST00000291547
9
ENSE00001050482
chr21:
44444981-44445057
77
PKNX1_HUMAN
284-309
26
1
A:32-57
26
1.10b
ENST00000291547
10b
ENSE00001050479
chr21:
44448812-44448984
173
PKNX1_HUMAN
309-367
59
1
A:57-73 (gaps)
59
1.11a
ENST00000291547
11a
ENSE00001050477
chr21:
44450000-44453692
3693
PKNX1_HUMAN
367-436
70
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1x2na1 (A:6-67)
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(
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Organisms
(
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(
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Homeodomain
(93)
Protein domain
:
Homeobox protein pknox1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1x2na1
A:6-67
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Homeobox_KN_1x2nA01 (A:25-64)
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Clan
:
HTH
(544)
Family
:
Homeobox_KN
(2)
Homo sapiens (Human)
(2)
1a
Homeobox_KN-1x2nA01
A:25-64
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Chain A
Asymmetric Unit 1
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