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1ITY
Asym. Unit
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Asym.Unit (495 KB)
Biol.Unit 1 (21 KB)
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Models
(25 )
Title
:
SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF HUMAN TRF1
Authors
:
T. Nishikawa, H. Okamura, A. Nagadoi, P. Konig, D. Rhodes, Y. Nishimura, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 Feb 02 (Deposition) - 06 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (25 x)
Biol. Unit 1: A (1x)
Keywords
:
Helix-Turn-Helix, Telomeres, Dna Binding, Myb Domain, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nishikawa, H. Okamura, A. Nagadoi, P. Konig, D. Rhodes, Y. Nishimura
Solution Structure Of A Telomeric Dna Complex Of Human Trf1
Structure V. 9 1237 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HTH_MYB (A:375-432)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_MYB
PS51294
Myb-type HTH DNA-binding domain profile.
TERF1_HUMAN
375-432
1
A:375-432
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Exons
(2, 2)
Info
All Exons
Exon 1.10 (A:373-381)
Exon 1.11a (A:382-439)
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1: Boundary 1.8d/1.10
2: Boundary 1.10/1.11a
3: Boundary 1.11a/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000276603
1a
ENSE00001408652
chr8:
73921099-73921440
342
TERF1_HUMAN
1-107
107
0
-
-
1.3
ENST00000276603
3
ENSE00000980813
chr8:
73926130-73926225
96
TERF1_HUMAN
107-139
33
0
-
-
1.4
ENST00000276603
4
ENSE00000980814
chr8:
73932919-73933040
122
TERF1_HUMAN
139-179
41
0
-
-
1.5b
ENST00000276603
5b
ENSE00000980815
chr8:
73934451-73934537
87
TERF1_HUMAN
180-208
29
0
-
-
1.6
ENST00000276603
6
ENSE00000980816
chr8:
73937057-73937206
150
TERF1_HUMAN
209-258
50
0
-
-
1.7b
ENST00000276603
7b
ENSE00000980817
chr8:
73939175-73939287
113
TERF1_HUMAN
259-296
38
0
-
-
1.8b
ENST00000276603
8b
ENSE00000980818
chr8:
73942571-73942630
60
TERF1_HUMAN
296-316
21
0
-
-
1.8d
ENST00000276603
8d
ENSE00000980819
chr8:
73944277-73944368
92
TERF1_HUMAN
316-347
32
0
-
-
1.10
ENST00000276603
10
ENSE00001087264
chr8:
73951351-73951454
104
TERF1_HUMAN
347-381
35
1
A:373-381
9
1.11a
ENST00000276603
11a
ENSE00002096154
chr8:
73958196-73958706
511
TERF1_HUMAN
382-439
58
1
A:382-439
58
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1itya_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
DNA-binding domain of telomeric protein
(9)
Protein domain
:
DNA-binding domain of human telomeric protein, hTRF1
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1itya_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ityA00 (A:373-439)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Human (Homo sapiens)
(23)
1a
1ityA00
A:373-439
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (495 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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