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1IG9
Asym. Unit
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Asym.Unit (177 KB)
Biol.Unit 1 (171 KB)
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(1)
Title
:
STRUCTURE OF THE REPLICATING COMPLEX OF A POL ALPHA FAMILY DNA POLYMERASE
Authors
:
M. C. Franklin, J. Wang, T. A. Steitz
Date
:
17 Apr 01 (Deposition) - 11 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,P,T
Biol. Unit 1: A,P,T (1x)
Keywords
:
Dna Polymerase, Catalytic Complex, Fidelity, Two Metal Ion Mechanism, Transferase/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Franklin, J. Wang, T. A. Steitz
Structure Of The Replicating Complex Of A Pol Alpha Family Dna Polymerase
Cell(Cambridge, Mass. ) V. 105 657 2001
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSP... (DOCa)
3a: THYMIDINE-5'-TRIPHOSPHATE (TTPa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
DOC
1
Mod. Nucleotide
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
3
TTP
1
Ligand/Ion
THYMIDINE-5'-TRIPHOSPHATE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:411 , LEU A:412 , ASP A:623 , TTP A:1005
BINDING SITE FOR RESIDUE CA A 1001
2
AC2
SOFTWARE
ASP A:411 , ASP A:623 , SER A:624 , TTP A:1005
BINDING SITE FOR RESIDUE CA A 1002
3
AC3
SOFTWARE
ASP A:684 , GLU A:686 , GLU A:716 , HOH A:1176 , HOH A:1283
BINDING SITE FOR RESIDUE CA A 1003
4
AC4
SOFTWARE
GLU A:116 , HOH A:1173 , HOH A:1224
BINDING SITE FOR RESIDUE CA A 1004
5
AC5
SOFTWARE
SER A:414 , LEU A:415 , TYR A:416 , PRO A:417 , ARG A:482 , LYS A:560 , ASN A:564 , ASP A:623 , CA A:1001 , CA A:1002 , HOH A:1007 , HOH A:1176 , HOH A:1196 , HOH A:1278 , DOC P:115 , DA T:3 , DG T:4
BINDING SITE FOR RESIDUE TTP A 1005
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DNA_POLYMERASE_B (A:619-627)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_POLYMERASE_B
PS00116
DNA polymerase family B signature.
DPOL_BPR69
619-627
1
A:619-627
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1ig9a1 (A:1-375)
2a: SCOP_d1ig9a2 (A:376-901)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
DnaQ-like 3'-5' exonuclease
(253)
Protein domain
:
Exonuclease domain of family B DNA polymerases
(102)
Bacteriophage RB69 [TaxId: 12353]
(92)
1a
d1ig9a1
A:1-375
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
DNA polymerase I
(233)
Protein domain
:
Family B DNA polymerase
(100)
Bacteriophage RB69 [TaxId: 12353]
(92)
2a
d1ig9a2
A:376-901
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ig9A02 (A:109-339)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
[unclassified]
(102)
1a
1ig9A02
A:109-339
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (177 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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