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1IC8
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (78 KB)
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(1)
Title
:
HEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE PRODUCT
Authors
:
Y-. I. Chi, J. D. Frantz, B-. C. Oh, L. Hansen, S. Dhe-Paganon, S. E. Shoel
Date
:
30 Mar 01 (Deposition) - 27 Nov 02 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,B,E,F (1x)
Keywords
:
Transcription Regulation; Dna-Binding; Pou Domain; Diabetes; Disease Mutation; Mody3, Transcription-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y-. I. Chi, J. D. Frantz, B-. C. Oh, L. Hansen, S. Dhe-Paganon, S. E. Shoelson
Diabetes Mutations Delineate An Atypical Pou Domains In Hnf1-Alpha
Mol. Cell V. 10 1129 2002
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(37, 74)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_010540 (A98V, chain A/B, )
02: VAR_010541 (L107R, chain A/B, )
03: VAR_010542 (K117E, chain A/B, )
04: VAR_003756 (Y122C, chain A/B, )
05: VAR_033088 (N127Y, chain A/B, )
06: VAR_010543 (I128N, chain A/B, )
07: VAR_010544 (P129T, chain A/B, )
08: VAR_010545 (R131Q, chain A/B, )
09: VAR_010546 (R131W, chain A/B, )
10: VAR_010547 (V133M, chain A/B, )
11: VAR_003757 (S142F, chain A/B, )
12: VAR_010548 (H143Y, chain A/B, )
13: VAR_010549 (K158N, chain A/B, )
14: VAR_003758 (R159Q, chain A/B, )
15: VAR_010550 (R159W, chain A/B, )
16: VAR_010551 (A161T, chain A/B, )
17: VAR_033089 (W165C, chain A/B, )
18: VAR_010554 (R203C, chain A/B, )
19: VAR_012484 (R203H, chain A/B, )
20: VAR_010555 (K205Q, chain A/B, )
21: VAR_033090 (W206C, chain A/B, )
22: VAR_033091 (W206L, chain A/B, )
23: VAR_010556 (R229Q, chain A/B, )
24: VAR_033092 (N237S, chain A/B, )
25: VAR_010557 (C241G, chain A/B, )
26: VAR_033093 (R244G, chain A/B, )
27: VAR_033094 (Q250P, chain A/B, )
28: VAR_010558 (L254M, chain A/B, )
29: VAR_010559 (V259D, chain A/B, )
30: VAR_010560 (T260M, chain A/B, )
31: VAR_010561 (R263C, chain A/B, )
32: VAR_033095 (F268C, chain A/B, )
33: VAR_010562 (R271W, chain A/B, )
34: VAR_010563 (R272C, chain A/B, )
35: VAR_003759 (R272H, chain A/B, )
36: VAR_033096 (K273E, chain A/B, )
37: VAR_HNF1A_HUMAN_CCDS9209_1_01 (K273E, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_010540
A
98
V
HNF1A_HUMAN
Polymorphism
1800574
A/B
A
98
V
02
UniProt
VAR_010541
L
107
R
HNF1A_HUMAN
Disease (MODY3)
---
A/B
L
107
R
03
UniProt
VAR_010542
K
117
E
HNF1A_HUMAN
Disease (MODY3)
---
A/B
K
117
E
04
UniProt
VAR_003756
Y
122
C
HNF1A_HUMAN
Disease (MODY3)
---
A/B
Y
122
C
05
UniProt
VAR_033088
N
127
Y
HNF1A_HUMAN
Unclassified
---
A/B
N
127
Y
06
UniProt
VAR_010543
I
128
N
HNF1A_HUMAN
Disease (MODY3)
---
A/B
I
128
N
07
UniProt
VAR_010544
P
129
T
HNF1A_HUMAN
Disease (MODY3)
---
A/B
P
129
T
08
UniProt
VAR_010545
R
131
Q
HNF1A_HUMAN
Disease (MODY3)
---
A/B
R
131
Q
09
UniProt
VAR_010546
R
131
W
HNF1A_HUMAN
Disease (MODY3)
---
A/B
R
131
W
10
UniProt
VAR_010547
V
133
M
HNF1A_HUMAN
Disease (MODY3)
---
A/B
V
133
M
11
UniProt
VAR_003757
S
142
F
HNF1A_HUMAN
Disease (MODY3)
---
A/B
S
142
F
12
UniProt
VAR_010548
H
143
Y
HNF1A_HUMAN
Disease (MODY3)
---
A/B
H
143
Y
13
UniProt
VAR_010549
K
158
N
HNF1A_HUMAN
Disease (MODY3)
---
A/B
K
158
N
14
UniProt
VAR_003758
R
159
Q
HNF1A_HUMAN
Disease (MODY3)
---
A/B
R
159
Q
15
UniProt
VAR_010550
R
159
W
HNF1A_HUMAN
Disease (MODY3)
---
A/B
R
159
W
16
UniProt
VAR_010551
A
161
T
HNF1A_HUMAN
Disease (MODY3)
---
A/B
A
161
T
17
UniProt
VAR_033089
W
165
C
HNF1A_HUMAN
Unclassified
---
A/B
W
165
C
18
UniProt
VAR_010554
R
203
C
HNF1A_HUMAN
Disease (MODY3)
---
A/B
R
203
C
19
UniProt
VAR_012484
R
203
H
HNF1A_HUMAN
Disease (MODY3)
---
A/B
R
203
H
20
UniProt
VAR_010555
K
205
Q
HNF1A_HUMAN
Disease (MODY3)
---
A/B
K
205
Q
21
UniProt
VAR_033090
W
206
C
HNF1A_HUMAN
Unclassified
---
A/B
W
206
C
22
UniProt
VAR_033091
W
206
L
HNF1A_HUMAN
Unclassified
---
A/B
W
206
L
23
UniProt
VAR_010556
R
229
Q
HNF1A_HUMAN
Disease (MODY3)
---
A/B
R
229
Q
24
UniProt
VAR_033092
N
237
S
HNF1A_HUMAN
Unclassified
---
A/B
N
237
S
25
UniProt
VAR_010557
C
241
G
HNF1A_HUMAN
Disease (MODY3)
---
A/B
C
241
G
26
UniProt
VAR_033093
R
244
G
HNF1A_HUMAN
Unclassified
---
A/B
R
244
G
27
UniProt
VAR_033094
Q
250
P
HNF1A_HUMAN
Unclassified
---
A/B
Q
250
P
28
UniProt
VAR_010558
L
254
M
HNF1A_HUMAN
Unclassified
---
A/B
L
254
M
29
UniProt
VAR_010559
V
259
D
HNF1A_HUMAN
Disease (MODY3)
---
A/B
V
259
D
30
UniProt
VAR_010560
T
260
M
HNF1A_HUMAN
Disease (MODY3)
---
A/B
T
260
M
31
UniProt
VAR_010561
R
263
C
HNF1A_HUMAN
Disease (MODY3)
---
A/B
R
263
C
32
UniProt
VAR_033095
F
268
C
HNF1A_HUMAN
Unclassified
---
A/B
F
268
C
33
UniProt
VAR_010562
R
271
W
HNF1A_HUMAN
Disease (MODY3)
---
A/B
R
271
W
34
UniProt
VAR_010563
R
272
C
HNF1A_HUMAN
Unclassified
---
A/B
R
272
C
35
UniProt
VAR_003759
R
272
H
HNF1A_HUMAN
Disease (MODY3)
---
A/B
R
272
H
36
UniProt
VAR_033096
K
273
E
HNF1A_HUMAN
Unclassified
---
A/B
K
273
E
37
CancerSNP
VAR_HNF1A_HUMAN_CCDS9209_1_01
*
K
273
E
HNF1A_HUMAN
Disease (Breast cancer)
---
A/B
K
273
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HOMEOBOX_2 (A:201-276,B:201-278)
2: HOMEOBOX_1 (A:253-276,B:253-276)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HOMEOBOX_2
PS50071
'Homeobox' domain profile.
HNF1A_HUMAN
197-278
2
A:201-276
B:201-278
2
HOMEOBOX_1
PS00027
'Homeobox' domain signature.
HNF1A_HUMAN
253-276
2
A:253-276
B:253-276
[
close PROSITE info
]
Exons
(4, 8)
Info
All Exons
Exon 1.1a (A:87-109 | B:85-109)
Exon 1.2 (A:109-176 | B:109-176)
Exon 1.3 (A:176-238 (gaps) | B:176-238 (gaps...)
Exon 1.4 (A:238-276 | B:238-278)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000257555
1a
ENSE00001893688
chr12:
121416346-121416897
552
HNF1A_HUMAN
1-109
109
2
A:87-109
B:85-109
23
25
1.2
ENST00000257555
2
ENSE00000756493
chr12:
121426636-121426835
200
HNF1A_HUMAN
109-176
68
2
A:109-176
B:109-176
68
68
1.3
ENST00000257555
3
ENSE00000756490
chr12:
121431323-121431509
187
HNF1A_HUMAN
176-238
63
2
A:176-238 (gaps)
B:176-238 (gaps)
63
63
1.4
ENST00000257555
4
ENSE00000564735
chr12:
121431967-121432208
242
HNF1A_HUMAN
238-319
82
2
A:238-276
B:238-278
39
41
1.5
ENST00000257555
5
ENSE00000756487
chr12:
121434065-121434216
152
HNF1A_HUMAN
319-369
51
0
-
-
1.6a
ENST00000257555
6a
ENSE00000940088
chr12:
121434344-121434545
202
HNF1A_HUMAN
370-437
68
0
-
-
1.6e
ENST00000257555
6e
ENSE00000756464
chr12:
121435277-121435468
192
HNF1A_HUMAN
437-501
65
0
-
-
1.7
ENST00000257555
7
ENSE00000756456
chr12:
121437071-121437192
122
HNF1A_HUMAN
501-541
41
0
-
-
1.8
ENST00000257555
8
ENSE00000756450
chr12:
121437286-121437430
145
HNF1A_HUMAN
542-590
49
0
-
-
1.9a
ENST00000257555
9a
ENSE00000835338
chr12:
121438868-121440899
2032
HNF1A_HUMAN
590-631
42
0
-
-
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ic8a1 (A:201-276)
1b: SCOP_d1ic8b1 (B:201-278)
2a: SCOP_d1ic8a2 (A:87-180)
2b: SCOP_d1ic8b2 (B:85-179)
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(
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(
)
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)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Homeodomain
(93)
Protein domain
:
Hepatocyte nuclear factor 1a (LFB1/HNF1)
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1ic8a1
A:201-276
1b
d1ic8b1
B:201-278
Fold
:
lambda repressor-like DNA-binding domains
(180)
Superfamily
:
lambda repressor-like DNA-binding domains
(180)
Family
:
POU-specific domain
(9)
Protein domain
:
Hepatocyte nuclear factor 1a (LFB1/HNF1)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1ic8a2
A:87-180
2b
d1ic8b2
B:85-179
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ic8A01 (A:87-180)
1b: CATH_1ic8B01 (B:87-201)
2a: CATH_1ic8A02 (A:203-276)
2b: CATH_1ic8B02 (B:203-276)
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(
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
434 Repressor (Amino-terminal Domain)
(116)
Homologous Superfamily
:
lambda repressor-like DNA-binding domains
(100)
[unclassified]
(45)
1a
1ic8A01
A:87-180
1b
1ic8B01
B:87-201
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
[unclassified]
(65)
2a
1ic8A02
A:203-276
2b
1ic8B02
B:203-276
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Pfam Domains
(0, 0)
Info
all PFAM domains
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