Entries with manually generated images from the JenaLib are marked in bold .
NAMES FOR DNA INTERCALATION COMPLEXES
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NDB PDB CSD Descriptor Coord
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1P96 1P96 n.a. DNA Y
1R4E 1R4E n.a. DNA Y
DD0001 427D n.a. 5'-D(*CP*GP*CP*(CH2-DM1)GP*CP*G)-3' Y
DD0012 452D n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3' Y
DD0015 465D n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', 9-AMINO-[N-(2- Y
DIMETHYLAMINO)ETHYL]ACRIDINE-4-CARBOXAMIDE
DD0017 482D n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', DAUNOMYCIN Y
DERIVATIVE
DD0018 1C9Z n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', BIS- Y
INTERCALATOR D232
DD0020 1CVX n.a. 5'-D(*CP*CP*AP*GP*AP*TP*CP*TP*GP*G)-3', Y
HYDROXYPYRROLE-IMIDAZOLE-PYRROLE POLYAMIDE
DD0022 1QDA n.a. 5'-D(*CP*GP*CP*(CH2)GP*CP*G)-3', DOXORUBICIN Y
DD0023 1DL8 n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', ACRIDINE Y
DERIVATIVE
DD0026 1EG6 n.a. 5'-D(*CP*GP*(BRO)UP*AP*CP*G)-3', PHENAZINE Y
DERIVATIVE
DD0028 1FD5 n.a. DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')-ACRIDINE Y
COMPLEX
DD0029 1FDG n.a. DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')-ANTHRACENE- Y
9-10-DIOL COMPLEX
DD0030 1FHY n.a. 5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3' Y
CROSSLINKED BY PSORALEN
DD0031 1FHZ n.a. 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3' Y
CROSSLINKED BY PSORALEN
DD0032 1FN1 n.a. 5'-D(P*GP*(BRO)UP*AP*CP*GC)-3', 5'- Y
D(*CP*GP*(BRO)UP*AP*CP*G)-3', ACRIDINE
DERIVATIVE
DD0033 1FN2 n.a. 5'-D(P*GP*TP*AP*CP*G)-3', 5'- Y
D(*CP*GP*TP*AP*CP*G)-3', ACRIDINE DERIVATIVE
DD0037 1G3X n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', ACRIDINE-PEPTIDE DRUG
DD0039 1I3W n.a. 5'-D(*C*GP*AP*TP*CP*GP*AP*(BRO)UP*CP*G)-3', Y
ACTINOMYCIN D
DD0045 1K2L n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', BIS-DACA Y
DD0047 1K9G n.a. 5'-D(*CP*CP*TP*AP*GP*G)-3', CRYPTOLEPINE Y
DD0048 1KCI n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', 9-AMINO-N-[2-(4- Y
MORPHOLINYL)ETHYL]-4-ACRIDINECARBOXAMIDE
DD0049 1L1H n.a. 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)- Y
3', acridine derivative
DD0051 1M69 n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', 5-BROMO-N[2- Y
(DIMETHYLAMINO)ETHYL]-9-AMINOACRIDINE-4-
CARBOXAMIDE
DD0054 1NAB n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3' Y
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NAMES FOR DNA INTERCALATION COMPLEXES
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NDB PDB CSD Descriptor Coord
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DD0057 1PFE n.a. ECHINOMYCIN/DNA COMPLEX Y
DD0062 1RQY n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', 9-amino-[N-(2- Y
dimethylamino)proply]-acridine-4-carboxamide
DDB003 n.a. CPGTPH 5'-D(*CP*G)-3', TERPYRIDINE PLATINIUM n.a.
DDB008 n.a. CIGWOE 5'-D(*CP*G)-3', DIMETHYLPROFLAVINE Y
DDB009 n.a. PFDOCT 5'-D(*CP*G)-3', PROFLAVINE Y
DDB033 n.a. n.a. 5'-D(*CP*G)-3', PROFLAVINE,-2C Y
DDB034 n.a. n.a. 5'-D(*CP*G)-3', PROFLAVINE,-130C Y
DDD030 1D32 n.a. 5'-D(*CP*GP*CP*G)-3', DITERCALINIUM Y
DDDB46 154D n.a. 5'-D(*(BR)CP*GP*CP*G)-3', FLEXI-DI Y
DDF001 1D11 n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', DAUNOMYCIN Y
DDF002 n.a. n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', ECHINOMYCIN n.a.
DDF007 n.a. n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', TRIOSTIN A Y
DDF018 1DA0 n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', DAUNOMYCIN Y
DDF019 1D12 n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', ADRIAMYCIN Y
DDF020 1D10 n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', DAUNOMYCIN Y
DDF022 1D15 n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', 4'-EPIADRIAMYCIN Y
DDF023 1D33 n.a. 5'-D(*CP*GP*CP*GP*CP*G)-3', DAUNORUBICIN Y
(DAUNOMYCIN) AND HCHO
DDF026 1D36 n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', MAR70 Y
DDF028 1D37 n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', 4-O-DEMETHYL-11- Y
DEOXYDOXORUBICIN
DDF029 1D38 n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', IDARUBICIN Y
DDF031 n.a. HEXXAI 5'-D(*TP*GP*TP*AP*CP*A)-3', DAUNOMYCIN Y
DDF032 n.a. HEXXAH 5'-D(*TP*GP*AP*TP*CP*A)-3', DAUNOMYCIN Y
DDF035 1D54 n.a. 5'-D(*TP*GP*TP*AP*CP*A)-3', 4'-EPIADRIAMYCIN Y
DDF036 1D58 n.a. 5'-D(*TP*GP*AP*TP*CP*A)-3', 4'-EPIADRIAMYCIN Y
DDF038 1D67 n.a. 5'-D(*TP*GP*AP*TP*CP*A)-3', IDARUBICIN Y
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NAMES FOR DNA INTERCALATION COMPLEXES
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NDB PDB CSD Descriptor Coord
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DDF039 110D n.a. 5'-D(*CP*GP*GP*CP*CP*G)-3', DAUNOMYCIN Y
DDF040 1DA9 n.a. 5'-D(*TP*GP*GP*CP*CP*A)-3', ADRIAMYCIN Y
DDF041 2DES n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', 3'-DESAMINO-3'- Y
(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN
DDF044 151D n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', ADRIAMYCIN,-160C Y
DDF045 152D n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', DAUNOMYCIN,-160C Y
DDF049 182D n.a. 5'-D(*TP*GP*AP*TP*CP*A)-3', NOGALAMYCIN Y
DDF050 198D n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', IDARUBICIN AND Y
SPERMINE
DDF052 224D n.a. 5'-D(*TP*GP*AP*TP*CP*A)-3', NOGALAMYCIN, Y
150K, PROLSQ REFINEMENT
DDF053 215D n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', (S)-3'-DESAMINO- Y
3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN
DDF054 234D n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', (S)-3'-DESAMINO- Y
3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN
DDF055 235D n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', (R)-3'-DESAMINO- Y
3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN
DDF056 236D n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', 3'-DESAMINO-3'- Y
(3-CYANO-4-MORPHOLINYL)-DOXORUBICIN
DDF060 231D n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', CU(II)MESO-(4-N- Y
TETRAMETHYLPYRIDYL)PORPHYRIN
DDF061 1IMR n.a. 5'-D(*TP*GP*TP*AP*CP*A)-3', 4'-DEOXY-4'- Y
IODODOXORUBICIN
DDF062 1IMS n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', 4'-DEOXY-4'- Y
IODODOXORUBICIN
DDF063 245D n.a. 5'-D(*TP*GP*AP*TP*CP*A)-3', NOGALAMYCIN, Y
150K, SHELXL-93 REFINEMENT
DDF064 258D n.a. 5'-D(*TP*GP*TP*AP*CP*A)-3', NOGALAMYCIN Y
DDF065 288D n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', 2'-BROMO-4'- Y
EPIDAUNORUBICIN
DDF066 276D n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', 2'-BROMO-4'- Y
EPIDAUNORUBICIN
DDF067 277D n.a. 5'-D(*CP*GP*CP*(CH2-DM8)GP*CP*G)-3' Y
DDF068 278D n.a. 5'-D(*CP*GP*GP*CP*CP*G)-3', 2'-BROMO-4'- Y
EPIDAUNORUBICIN
DDF069 282D n.a. 5'-D(*CP*CP*CP*GP*GP*G)-3', NOGALAMYCIN Y
DDF074 367D n.a. 5'-D(*CP*GP*(BRO)UP*AP*CP*G)-3', ACRIDINE Y
DERIVATIVE
DDF077 381D n.a. 5'-D(*TP*GP*(CH2-DM8)GP*CP*CP*G)-3', 2'- Y
BROMO-4'-EPIDAUNORUBICIN
DDF078 385D n.a. 5'-D(*CP*GP*AP*TP*CP*G)-3', N-(2- Y
HYDROXYETHYL)DOXORUBICIN
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NAMES FOR DNA INTERCALATION COMPLEXES
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NDB PDB CSD Descriptor Coord
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DDF079 386D n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', N,N-BIS(3- Y
AMINOPROPYL)-2-ANTHRAQUINONESULFONAMIDE
DDFA14 1D21 n.a. 5'-D(*(CH3)CP*GP*TP(S)*AP*(CH3)CP*G)-3', Y
NOGALAMYCIN
DDFA15 1D22 n.a. 5'-D(*(CH3)CP*GP*TP(S)*AP*(CH3)CP*G)-3', U- Y
58872
DDFA16 1D17 n.a. 5'-D(*(CH3)CP*GP*TP(S)*AP*(CH3)CP*G)-3', Y
NOGALAMYCIN
DDFB24 2D34 n.a. 5'-D(*CP*GP*TP*(NH2,CH2-DAUNOMYCIN)AP*CP*G)- Y
3'
DDFB25 1D35 n.a. 5'-D(*CP*GP*TP*(NH2)AP*CP*G)-3', MAR70 AND Y
HCHO
DDFB58 n.a. n.a. 5'-D(*CP*GP*CP*GP*CP*G)-3', MAR70 n.a.
COBALT(II)CHLORIDE SOAKED
DDFB70 308D n.a. 5'-D(*CP*GP*(GLU)TP*AP*CP*G)-3', DAUNOMYCIN Y
DDFB76 380D n.a. 5'-D(*CP*GP*(CH2-DM8)GP*(BR)CP*CP*G)-3' Y
DDFP13 n.a. n.a. 5'-D(*CP*GP*TP(S)*AP*CP*G)-3', NOGALAMYCIN n.a.
DDFP21 1D14 n.a. 5'-D(*CP*GP*TP(S)*AP*CP*G)-3', 11- Y
DEOXYDAUNOMYCIN
DDFS42 n.a. n.a. 5'-D(*CP*GP*)-ARA(*CP*)-D(*GP*CP*G)-3', n.a.
DAUNOMYCIN AND HCHO
DDFS43 n.a. n.a. 5'-D(*CP*AP*)-ARA(*CP*)-D(*GP*TP*G)-3', n.a.
ADRIAMYCIN AND HCHO
DDH010 0DAC OCTXAA 5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3', TRIOSTIN A Y
DDH037 2D55 n.a. 5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3', Y
ACTINOMYCIN D, RE-REFINEMENT
DDH048 173D n.a. 5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3', Y
ACTINOMYCIN D
DDH051 209D n.a. 5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3', N8- Y
ACTINOMYCIN D
DDH071 316D n.a. 5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3', F8- Y
ACTINOMYCIN D
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