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(-) Description

Title :  INTERACTIONS BETWEEN MORPHOLINYL ANTHRACYCLINES AND DNA: THE CRYSTAL STRUCTURE OF A MORPHOLINO DOXORUBICIN BOUND TO D(CGTACG)
 
Authors :  M. Cirilli, F. Bachechi, G. Ughetto, F. P. Colonna, M. L. Capobianco
Date :  16 Mar 93  (Deposition) - 15 Jul 93  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Right Handed Dna, Double Helix, Complexed With Drug (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Cirilli, F. Bachechi, G. Ughetto, F. P. Colonna, M. L. Capobianco
Interactions Between Morpholinyl Anthracyclines And Dna. The Crystal Structure Of A Morpholino Doxorubicin Bound To D(Cgtacg).
J. Mol. Biol. V. 230 878 1993
PubMed-ID: 8478940  |  Reference-DOI: 10.1006/JMBI.1993.1208
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1DMM2Ligand/Ion3'-DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN
2MG1Ligand/IonMAGNESIUM ION
3NA2Ligand/IonSODIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:1 , DG A:2 , DT A:3 , DA A:4 , DMM A:14 , HOH A:23 , HOH A:25 , HOH A:27 , HOH A:60 , HOH A:64 , DA B:10 , DC B:11 , DG B:12 , NA B:16BINDING SITE FOR RESIDUE DMM A 13
2AC2SOFTWAREDA A:4 , DC A:5 , DG A:6 , DMM A:13 , NA A:17 , HOH A:37 , HOH A:40 , HOH A:48 , HOH A:93 , DC B:7 , DG B:8 , DT B:9 , DA B:10BINDING SITE FOR RESIDUE DMM A 14
3AC3SOFTWAREHOH A:48 , HOH A:57 , HOH B:49 , HOH B:50 , HOH B:51 , HOH B:58BINDING SITE FOR RESIDUE MG B 15
4AC4SOFTWAREDMM A:13 , DG B:12 , HOH B:46 , HOH B:59 , HOH B:65BINDING SITE FOR RESIDUE NA B 16
5AC5SOFTWAREDG A:6 , DMM A:14 , HOH A:81 , HOH A:85 , HOH A:87BINDING SITE FOR RESIDUE NA A 17

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:6
                                     
                  2des A  1 CGTACG  6


Chain B from PDB  Type:DNA  Length:6
                                     
                  2des B  7 CGTACG 12
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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