Entries with manually generated images from the JenaLib are marked in bold .
NAMES FOR DNA GROOVE BINDER COMPLEXES
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NDB PDB CSD Descriptor Coord
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BDD001 403D n.a. 5'- Y
D(*CP*GP*CP*(HYD)AP*AP*AP*TP*TP*TP*GP*CP*G)-
3', 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-
PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE
BDD002 407D n.a. 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3', Y
IMIDAZOLE-PYRROLE-HYDROXYPYRROLE POLYAMIDE
BDD003 408D n.a. 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3', Y
IMIDAZOLE-PYRROLE POLYAMIDE
DD0002 432D n.a. 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3', DAPI Y
DD0003 442D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BENZIMIDAZOLE DERIVATIVE
DD0004 443D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BENZIMIDAZOLE DERIVATIVE
DD0005 444D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BENZIMIDAZOLE DERIVATIVE
DD0006 445D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BENZIMIDAZOLE DERIVATIVE
DD0007 447D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
DD0008 448D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BENZIMIDAZOLE DERIVATIVE
DD0009 449D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BENZIMIDAZOLE DERIVATIVE
DD0013 453D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BENZIMIDAZOLE DERIVATIVE
DD0014 459D n.a. 5'- Y
D(*CP*GP*(BRO)CP*AP*TP*AP*TP*TP*TP*GP*CP*G)-
3', 5'-
D(*CP*GP*CP*AP*AP*AP*TP*AP*TP*GP*CP*G)-3',
TRI-BENZIMIDAZOLE
DD0016 473D n.a. 5'-D(*CP*GP*TP*AP*TP*AP*TP*AP*CP*G)-3', Y
NETROPSIN
DD0021 1CVY n.a. 5'-D(*CP*CP*AP*GP*AP*TP*CP*TP*GP*G)-3', Y
IMIDAZOLE-PYRROLE POLYAMIDE
DD0024 1DVL n.a. 5'-D(*CP*CP*IP*IP*CP*IP*CP*CP*IP*I)-3', Y
NETROPSIN
DD0025 1EEL n.a. D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', Y
BIS-PHENYL-FURAN DERIVATIVE
DD0027 1EM0 n.a. 5'-D(*(BRO)CP*CP*TP*AP*GP*G)-3', TETRA[N- Y
METHYL-PYRIDYL] PORPHYRIN-NICKEL
DD0034 1FMQ n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BIS-PHENYL FURAN DERIVATIVE
DD0035 1FMS n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BIS-PHENYL FURAN DERIVATIVE
DD0036 1FTD n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BENZIMIDAZOLE DERIVATIVE
DD0042 1JTL n.a. 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3', Y
DISTAMYCIN A
DD0043 1JUX n.a. 5'-D(*IP*TP*IP*TP*AP*CP*AP*C)-3', Y
DISTAMYCIN A
DD0046 1K2Z n.a. 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3', Y
DISTAMYCIN A
DD0052 1M6F n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', carbonimidic dihydrazide derivative
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Page 1 created by the NDB Project on Wed May 26 14:30:12 2004
NAMES FOR DNA GROOVE BINDER COMPLEXES
--------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
--------------------------------------------------------------------------
GDH060 378D n.a. 5'-D(*GP*TP*AP*TP*AP*TP*AP*C)-3', Y
DISTAMYCIN A
GDHB25 159D n.a. 5'-D(*IP*CP*IP*CP*IP*CP*IP*C)-3', DISTAMYCIN Y
GDJ046 261D n.a. 5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3', Y
NETROPSIN
GDJ054 334D n.a. 5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3', Y
DIIMIDAZOLE LEXITROPSIN
GDJ057 365D n.a. 5'-D(*CP*CP*AP*GP*GP*(BR)CP*CP*TP*GP*G)-3' Y
GDJ059 375D n.a. 5'-D(*CP*CP*CP*CP*CP*IP*IP*IP*IP*I)-3', Y
NETROPSIN
GDJB29 274D n.a. 5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3', Y
ANTHRAMYCIN
GDJB55 358D n.a. 5'-D(*CP*(BRO)CP*CP*CP*CP*IP*IP*IP*IP*I)- Y
3', NETROPSIN
GDJB58 474D n.a. 5'-D(*CP*CP*CP*(BRO)CP*CP*IP*IP*IP*IP*I)- Y
3', NETROPSIN
GDL001 n.a. n.a. 5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)- Y
3', NETROPSIN, CONFORMATION 1
GDL002 1DNH n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', HOECHST 33258
GDL003 2DND n.a. 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)- Y
3', DISTAMYCIN
GDL004 1DNE n.a. 5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)- Y
3', NETROPSIN, CONFORMATION 2
GDL006 8BNA n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', HOECHST 33258
GDL007 n.a. n.a. 5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)- n.a.
3', HOECHST 33258
GDL008 1D30 n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', 4'-6-DIAMIDINE-2-PHENYL INDOLE
GDL009 2DBE n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BERENIL
GDL010 1D43 n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', HOECHST 33258, 0 C, PIPERAZINE UP
GDL011 1D44 n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', HOECHST 33258, 0 C, PIPERAZINE DOWN
GDL012 1D45 n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', HOECHST 33258,-25 C, PIPERAZINE DOWN
GDL013 1D46 n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', HOECHST 33258,-100 C, PIPERAZINE DOWN
GDL014 121D n.a. 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)- Y
3', NETROPSIN
GDL015 1D64 n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', PENTAMIDINE
GDL016 1D63 n.a. 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)- Y
3', BERENIL
GDL018 1D86 n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', NETROPSIN
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Page 2 created by the NDB Project on Wed May 26 14:30:12 2004
NAMES FOR DNA GROOVE BINDER COMPLEXES
--------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
--------------------------------------------------------------------------
GDL021 129D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', HOECHST 33342
GDL022 127D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', HOECHST 33258
GDL023 1PRP n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', PROPAMIDINE
GDL026 264D n.a. 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)- Y
3', HOECHST 33258
GDL027 166D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', GAMMA-OXAPENTAMIDINE
GDL028 296D n.a. 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)- Y
3', HOECHST 33258
GDL030 195D n.a. 5'-D(*CP*GP*CP*GP*TP*TP*AP*AP*CP*GP*CP*G)- Y
3', NETROPSIN
GDL032 102D n.a. 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)- Y
3', PROPAMIDINE
GDL033 109D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', 5-(2-IMIDAZOLINYL)-2[2-(4-
HYDROXYPHENYL)-5-BENZIMIDAZOLYL]
BENZIMIDAZOLE
GDL036 227D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', 2,5-BIS(4-GUANYLPHENYL)FURAN
GDL037 1LEX n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', MONOIMIDAZOLE LEXITROPSIN (ORIENTATION
1)
GDL038 1LEY n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', MONOIMIDAZOLE LEXITROPSIN (ORIENTATION
2)
GDL039 263D n.a. 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)- Y
3', TRIBIZ
GDL044 298D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', 2,5-BIS{[4-(N-ISOPROPYL)AMIDINO]
PHENYL}FURAN
GDL045 289D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', 2,5-BIS{[4-(N-CYCLOPROPYLAMIDINO)
PHENYL]}FURAN
GDL047 302D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', META-OH(N) HOECHST, 'HYDROXYL IN'
CONFORMATION
GDL048 303D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', META-OH(N) HOECHST, 'HYDROXYL OUT'
CONFORMATION
GDL052 311D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', BIS-AMIDINIUM DERIVATIVE OF HOECHST
33258
GDL053 328D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', SN7167 COMPLEX
GDL056 360D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- Y
3', 2,5-BIS{[4-(N-ETHYLAMIDINO)]
PHENYL}FURAN
GDLB05 6BNA DUMFUM 5'- Y
D(*CP*GP*CP*GP*AP*AP*TP*TP*(BR)CP*GP*CP*G)-
3', NETROPSIN
GDLB17 1D85 n.a. 5'- Y
D(*CP*GP*CP*(C2H5)GP*AP*AP*TP*TP*CP*GP*CP*G)
-3', NETROPSIN
GDLB19 128D n.a. 5'- Y
D(*CP*GP*CP*(C2H5)GP*AP*AP*TP*TP*CP*GP*CP*G)
-3', HOECHST 33258
GDLB20 130D n.a. 5'- Y
D(*CP*GP*CP*(C2H5)GP*AP*AP*TP*TP*CP*GP*CP*G)
-3', HOECHST 33342
GDLB24 144D n.a. 5'- Y
D(*CP*GP*CP*(C2H5)GP*AP*AP*TP*TP*CP*GP*CP*G)
-3', SN6999
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Page 3 created by the NDB Project on Wed May 26 14:30:12 2004
NAMES FOR DNA GROOVE BINDER COMPLEXES
--------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
--------------------------------------------------------------------------
GDLB31 101D n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*TP*TP*(BR)CP*GP*CP*G)-
3', NETROPSIN, RE-REFINEMENT
GDLB41 267D n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*TP*TP*(CH3)CP*GP*CP*G)-
3', DISTAMYCIN A
GDLB42 268D n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*TP*TP*(CH3)CP*GP*CP*G)-
3', BERENIL
GDLB43 269D n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*TP*TP*(CH3)CP*GP*CP*G)-
3', HOECHST 3325
GDLB49 304D n.a. 5'-D(*IP*CP*AP*TP*AP*TP*IP*C)-3', Y
DISTAMYCIN A, MONOCLINIC FORM
GDLB50 305D n.a. 5'-D(*IP*CP*AP*TP*AP*TP*IP*C)-3', Y
DISTAMYCIN A, TETRAGONAL FORM
GDLB51 306D n.a. 5'-D(*IP*CP*IP*TP*AP*CP*IP*C)-3', Y
DISTAMYCIN A
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Page 4 created by the NDB Project on Wed May 26 14:30:12 2004