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(-) Description

Title :  TARGETING THE MINOR GROOVE OF DNA: CRYSTAL STRUCTURES OF TWO COMPLEXES BETWEEN FURAN DERIVATIVES OF BERENIL AND THE DNA DODECAMER D(CGCGAATTCGCG)2
 
Authors :  J. O. Trent, G. R. Clark, A. Kumar, W. D. Wilson, D. W. Boykin, J. E. Hall, R. R. Tidwell, B. L. Blagburn, S. Neidle
Date :  10 Oct 96  (Deposition) - 17 Dec 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  B-Dna, Double Helix, Complexed With Drug (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. O. Trent, G. R. Clark, A. Kumar, W. D. Wilson, D. W. Boykin, J. E. Hall, R. R. Tidwell, B. L. Blagburn, S. Neidle
Targeting The Minor Groove Of Dna: Crystal Structures Of Two Complexes Between Furan Derivatives Of Berenil And The Dna Dodecamer D(Cgcgaattcgcg)2.
J. Med. Chem. V. 39 4554 1996
PubMed-ID: 8917643  |  Reference-DOI: 10.1021/JM9604484
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-R(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- 3')
    Chains: A, B

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1D191Ligand/Ion2,5-BIS{[4-(N-CYCLOPROPYLDIAMINOMETHYL)PHENYL]}FURAN

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDA A:5 , DA A:6 , DT A:7 , DT A:8 , DC A:9 , HOH A:28 , HOH A:29 , DA B:17 , DA B:18 , DT B:19 , DT B:20 , DC B:21BINDING SITE FOR RESIDUE D19 A 25

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 289D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 289D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 289D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 289D)

(-) Exons   (0, 0)

(no "Exon" information available for 289D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:12
                                           
                  289d A  1 CGCGAATTCGCG 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  289d B 13 CGCGAATTCGCG 24
                                    22
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 289D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 289D)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  289d
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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