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(-) Description

Title :  THREE-DIMENSIONAL CRYSTAL STRUCTURE OF THE A-TRACT DNA DODECAMER D(CGCAAATTTGCG) COMPLEXED WITH THE MINOR-GROOVE-BINDING DRUG HOECHST 33258
 
Authors :  M. C. Vega, I. Garcia-Saez, J. Aymami, R. Eritja, G. A. Van Der Marel, J Boom, A. Rich, M. Coll
Date :  22 Sep 94  (Deposition) - 31 Mar 95  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.44
Chains :  Asym./Biol. Unit :  A,B
Keywords :  B-Dna, Double Helix, Complexed With Drug, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. C. Vega, I. Garcia Saez, J. Aymami, R. Eritja, G. A. Van Der Marel, J. H. Van Boom, A. Rich, M. Coll
Three-Dimensional Crystal Structure Of The A-Tract Dna Dodecamer D(Cgcaaatttgcg) Complexed With The Minor-Groove-Binding Drug Hoechst 33258.
Eur. J. Biochem. V. 222 721 1994
PubMed-ID: 7517864  |  Reference-DOI: 10.1111/J.1432-1033.1994.TB18917.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1HT1Ligand/Ion2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDA A:6 , DT A:7 , DT A:8 , DT A:9 , DG A:10 , DC A:11 , DA B:17 , DA B:18 , DT B:19 , DT B:20 , DT B:21 , DG B:24BINDING SITE FOR RESIDUE HT B 25

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 264D)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 264D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:DNA  Length:12
                                           
                  264d A  1 CGCAAATTTGCG 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  264d B 13 CGCAAATTTGCG 24
                                    22
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 264D)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  264d
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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