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(-) Description

Title :  CRYSTAL STRUCTURE OF A BERENIL-DODECANUCLEOTIDE COMPLEX: THE ROLE OF WATER IN SEQUENCE-SPECIFIC LIGAND BINDING
 
Authors :  D. G. Brown, M. R. Sanderson, J. V. Skelly, T. C. Jenkins, T. Brown, E. Garman, D. I. Stuart, S. Neidle
Date :  19 Mar 90  (Deposition) - 15 Jul 91  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  B-Dna, Double Helix, Complexed With Drug (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. G. Brown, M. R. Sanderson, J. V. Skelly, T. C. Jenkins, T. Brown, E. Garman, D. I. Stuart, S. Neidle
Crystal Structure Of A Berenil-Dodecanucleotide Complex: The Role Of Water In Sequence-Specific Ligand Binding.
Embo J. V. 9 1329 1990
PubMed-ID: 2323343
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- 3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1BRN1Ligand/IonBERENIL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDA A:6 , DT A:7 , DT A:8 , DC A:9 , HOH A:43 , HOH A:51 , DA B:18 , DT B:19 , DT B:20 , DC B:21BINDING SITE FOR RESIDUE BRN A 25

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DBE)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  2dbe A  1 CGCGAATTCGCG 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  2dbe B 13 CGCGAATTCGCG 24
                                    22
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 Classification and Annotation

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