Entries with manually generated images from the JenaLib are marked in bold .
NAMES FOR B-DNA'S WITH SPECIAL FEATURES
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
BD0006 431D n.a. 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' Y
BD0008 455D n.a. CROSSLINKED 5'- Y
D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-
3'
BD0014 463D n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
BD0016 475D n.a. 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3' Y
BD0017 1D3R n.a. 5'- Y
D(*CP*(BRO)UP*CP*CP*(BRO)UP*CP*CP*GP*CP*GP*C
P*G)-3', 5'-D(*CP*GP*CP*GP*CP*GP*GP*AP*G)-3'
BD0018 476D n.a. 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
BD0019 477D n.a. 5'-D(*GP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
BD0020 478D n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-
3'
BD0022 1QP5 n.a. 5'-D(*AP*CP*CP*GP*GP*CP*GP*CP*CP*AP*CP*A)- Y
3', 5'-
D(*TP*GP*TP*GP*GP*CP*GP*CP*CP*GP*GP*T)-3'
BD0027 1DCR n.a. 5'-D(*CP*CP*GP*AP*AP*(BRO)UP*GP*AP*GP*G)-3' Y
BD0032 1EHV n.a. 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' Y
BD0037 1ENN n.a. 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3' Y
BD0056 1K71 n.a. 5'-D(*TP*GP*GP*CP*CP*TP*TP*AP*AP*GP*G)-3' Y
BD0061 1N5C n.a. 5'- Y
D(*CP*GP*CP*GP*AP*AP*TP*TP*(EDC)P*GP*CP*G)-
3'
BD0069 1S9B n.a. 5'-D(*GP*AP*AP*TP*TP*CP*G)-3' Y
BD0070 1SGS n.a. 5'- Y
D(*CP*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP
*AP*GP*C)-3'
BDF062 206D n.a. 5'-D(*CP*GP*GP*TP*GP*G)-3', SPERMINE Y
BDF068 251D n.a. 5'-D(*CP*TP*CP*GP*AP*G)-3' Y
BDL021 n.a. n.a. 5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*CP*GP*CP*G)- Y
3'/ 5'-D(*CP*GP*CP*GP*TP*T)-3'+ 5'-
D(*TP*TP*CP*GP*CP*G)-3', MODEL A4
BDL032 1NDN n.a. 5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*CP*GP*CP*G)- Y
3'/ 5'-D(*CP*GP*CP*GP*TP*T*)-3'+ 5'-
D(*TP*TP*CP*GP*CP*G)-3', MODEL T4
BDL034 n.a. n.a. 5'-D(*AP*CP*CP*GP*GP*CP*GP*CP*CP*AP*CP*A)- n.a.
3',-15 C
DD0062 1RQY n.a. 5'-D(*CP*GP*TP*AP*CP*G)-3', 9-amino-[N-(2- Y
dimethylamino)proply]-acridine-4-carboxamide
UD0012 1G6D n.a. PEPTIDYL-D(CGCAATTGCG) Y
UD0023 1NQS n.a. 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3' Y
UD0024 1NT8 n.a. CCGGTACCGG Y
------------------------------------------------------------------------
Page 1 created by the NDB Project on Wed May 26 14:30:07 2004
NAMES FOR B-DNA'S WITH SPECIAL FEATURES
------------------------------------------------------------------------
NDB PDB CSD Descriptor Coord
------------------------------------------------------------------------
UD0025 1NVN n.a. 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3' Y
UD0026 1NVY n.a. 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3' Y
UD0028 1P4Y n.a. 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3' Y
UD0030 1P54 n.a. 5'-D(*CP*CP*AP*GP*TP*AP*CP*(BRU)P*GP*G)-3' Y
UDH052 284D n.a. 5'-CD(*P*AP*TP*TP*CP*AP*TP*TP*C)-3' Y
UDI030 208D n.a. 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3' Y
UDI047 253D n.a. 5'-D(*GP*CP*GP*TP*AP*CP*GP*CP*G)-3' Y
UDJ031 237D n.a. 5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3' Y
UDJ048 273D n.a. 5'-D(*CP*GP*AP*CP*GP*AP*TP*CP*GP*T)-3' Y
UDJ049 272D n.a. 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' Y
UDJ060 309D n.a. 5'-D(*CP*GP*AP*CP*GP*AP*TP*CP*GP*T)-3' Y
UDM010 1D31 n.a. 5'- Y
D(*CP*GP*CP*AP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'
UDM017 n.a. n.a. 5'- n.a.
D(*CP*GP*CP*AP*GP*AP*AP*TP*TP*CP*GP*CP*G)-
3', SOAKED W/PROFLAVIN
UDO009 n.a. n.a. 5'- n.a.
D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*AP*CP*GP*CP
*G)-3'
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Page 2 created by the NDB Project on Wed May 26 14:30:07 2004