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(-) Description

Title :  CRYSTAL STRUCTURE OF TRIPLEX DNA
 
Authors :  S. Rhee, Z. -J. Han, K. Liu, H. T. Todd Miles, D. R. Davies
Date :  30 Sep 99  (Deposition) - 01 Jan 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Triplex Dna And Its Junction With A Duplex Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Rhee, Z. Han, K. Liu, H. T. Miles, D. R. Davies
Structure Of A Triple Helical Dna With A Triplex-Duplex Junction.
Biochemistry V. 38 16810 1999
PubMed-ID: 10606513  |  Reference-DOI: 10.1021/BI991811M
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*(BRU)P*CP*CP*(BRU) P*CP*CP*GP*CP*GP*CP*G)-3')
    ChainsA, C
    EngineeredYES
    SyntheticYES
 
Molecule 2 - DNA (5'-D(*CP*GP*CP*GP*CP*GP*GP*AP*G)-3')
    ChainsB, D
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1BRU4Mod. Nucleotide5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1D3R)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1D3R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1D3R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1D3R)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1D3R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  1d3r A  1 CuCCuCCGCGCG 12
                             |  |   10  
                             |  |       
                             2-BRU      
                                5-BRU   

Chain B from PDB  Type:DNA  Length:9
                                        
                  1d3r B 13 CGCGCGGAG 21

Chain C from PDB  Type:DNA  Length:12
                                           
                  1d3r C 31 CuCCuCCGCGCG 42
                             |  |   40  
                            32-BRU      
                               35-BRU   

Chain D from PDB  Type:DNA  Length:8
                                       
                  1d3r D 44 GCGCGGAG 51

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1D3R)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1D3R)

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