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(-) Description

Title :  STRONTIUM BOUND TO THE HOLLIDAY JUNCTION SEQUENCE D(TCGGTACCGA)4
 
Authors :  C. J. Cardin, J. H. Thorpe, B. C. Gale, S. C. M. Teixeira
Date :  05 Feb 03  (Deposition) - 25 Feb 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Holliday Junction, Strontium, Sr2+, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. J. Cardin, J. H. Thorpe, B. C. Gale, S. C. M. Teixeira
Strontium, A Mad Taerget For The Dna Holliday Junction
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - D(TCGGTACCGA)4
    Chains: A, B
    Engineered: YES
    Other Details: CHEMICALLY SYNTHEZIED
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1SR5Ligand/IonSTRONTIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1SR-1Ligand/IonSTRONTIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH B:472 , HOH B:473 , HOH B:474 , HOH B:475 , HOH B:476 , HOH B:477 , HOH B:478 , HOH B:479BINDING SITE FOR RESIDUE SR B 101
2AC2SOFTWAREHOH B:480 , HOH B:481 , HOH B:482 , HOH B:483 , HOH B:484 , HOH B:485 , HOH B:486 , HOH B:487BINDING SITE FOR RESIDUE SR B 102
3AC3SOFTWAREHOH A:489 , HOH A:490 , HOH A:491 , HOH B:488 , HOH B:492 , HOH B:493 , HOH B:638BINDING SITE FOR RESIDUE SR A 103
4AC4SOFTWAREHOH A:496 , HOH A:497 , HOH A:499 , HOH A:500 , HOH B:494 , HOH B:495 , HOH B:498BINDING SITE FOR RESIDUE SR A 104
5AC5SOFTWAREHOH B:466 , HOH B:467 , HOH B:468 , HOH B:469 , HOH B:470 , HOH B:471 , HOH B:639BINDING SITE FOR RESIDUE SR B 105

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NVY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NVY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1nvy A  1 TCGGTACCGA 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  1nvy B  1 TCGGTACCGA 10
                                    10
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(-) SCOP Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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