1NDN | BDL032 - JenaLib

Title :   MOLECULAR STRUCTURE OF NICKED DNA. MODEL T4

Authors :   J. Aymani, M. Coll, G. A. Van Der Marel, J. H. Van Boom, A. H. -J. Wang, A. Rich

Date :   15 Jan 92 (Deposition) - 14 Jul 92 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   B-Dna, Double Helix, Nicked (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Aymami, M. Coll, G. A. Van Der Marel, J. H. Van Boom, A. H. Wang, A. Rich
Molecular Structure Of Nicked Dna: A Substrate For Dna Repair Enzymes.
Proc. Natl. Acad. Sci. Usa V. 87 2526 1990
PubMed-ID: 2320572 | Reference-DOI: 10.1073/PNAS.87.7.2526
(for further references see the PDB file header)

Compounds

*Molecule 1 - DNA (5'-D(CPGPCPGPAPAPAPAPCPGPCPG)- 3')*
	Chains	:	A
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 2 - DNA (5'-D(CPGPCPGPTPT)-3')*
	Chains	:	B
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 3 - DNA (5'-D(TPTPCPGPCPG)-3')*
	Chains	:	C
	Engineered	:	YES
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:12
                                           
                  1ndn A  1 CGCGAAAACGCG 12
                                    10

Chain B from PDB  Type:DNA  Length:6
                                     
                  1ndn B 13 CGCGTT 18

Chain C from PDB  Type:DNA  Length:6
                                     
                  1ndn C 19 TTCGCG 24

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

Visualization

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Still Images

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Description