Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 2b - Page 1:

Structures for which the helical axis is best described by a circular line (arc).
Sigma2 of a circular line (arc) is only slightly smaller (< 0.2) than for the next best model(s). The structures are listed by the number of base pairs (bp).

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Number of structures: 98 (this pages) / 295 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
107d	------	E   |    H   |    B	7	nuc	NMR	circular line	0.608	41
						straight line	0.626
1dnk	pde005	E   |    H   |    B	7	prot-nuc	diff	circular line	0.153	58
						straight line	0.301
1huo	pd0196	E   |    H   |    B	7	prot-nuc	diff	circular line	0.508	41
						straight line	0.661
1zqe	pde031	E   |    H   |    B	7	prot-nuc	diff	circular line	0.391	55
						straight line	0.456
1zqh	pde034	E   |    H   |    B	7	prot-nuc	diff	circular line	0.364	63
						straight line	0.364
1zqm	pde039	E   |    H   |    B	7	prot-nuc	diff	circular line	0.305	67
						straight line	0.306
1zqq	pde043	E   |    H   |    B	7	prot-nuc	diff	circular line	0.609	40
						straight line	0.746
2bpg	pde012	E   |    H   |    B	7	prot-nuc	diff	circular line	0.350	44
						straight line	0.523
434d	ar0009	E   |    H   |    B	7	nuc	diff	circular line	0.186	37
						straight line	0.374
464d	ar0014	E   |    H   |    B	7	nuc	diff	circular line	0.168	46
						straight line	0.269
8icf	pde067	E   |    H   |    B	7	prot-nuc	diff	circular line	0.099	100
						straight line	0.126
8icg	pde068	E   |    H   |    B	7	prot-nuc	diff	circular line	0.111	83
						straight line	0.169
8ici	pde070	E   |    H   |    B	7	prot-nuc	diff	circular line	0.265	64
						straight line	0.306
8ick	pde072	E   |    H   |    B	7	prot-nuc	diff	circular line	0.315	63
						straight line	0.328
8ict	pde081	E   |    H   |    B	7	prot-nuc	diff	circular line	0.092	103
						straight line	0.111
8icx	pde085	E   |    H   |    B	7	prot-nuc	diff	circular line	0.209	78
						straight line	0.213
9icb	pde092	E   |    H   |    B	7	prot-nuc	diff	circular line	0.129	81
						straight line	0.188
9icc	pde093	E   |    H   |    B	7	prot-nuc	diff	circular line	0.129	66
						straight line	0.245
9ice	pde094	E   |    H   |    B	7	prot-nuc	diff	circular line	0.104	101
						straight line	0.118
9ich	pde097	E   |    H   |    B	7	prot-nuc	diff	circular line	0.141	64
						straight line	0.284
9icv	pde0111	E   |    H   |    B	7	prot-nuc	diff	circular line	0.190	74
						straight line	0.228
0an8	adh010	E   |    H   |    B	8	nuc	diff	circular line	0.067	67
						straight line	0.211
						single-kink line	0.218		11			3	5
115d	adhb11	E   |    H   |    B	8	nuc	diff	circular line	0.076	78
						straight line	0.169
						single-kink line	0.215		9			3	5
124d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.043	119
						single-kink line	0.053		8			2	6
						straight line	0.056
188d	adh057	E   |    H   |    B	8	nuc	diff	circular line	0.111	91
						straight line	0.138
						single-kink line	0.195		8			4	4
193d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.297	79
						single-kink line	0.374		12			4	4
1bp8	------	E   |    H   |    B	8	nuc	NMR	circular line	0.035	44
						single-kink line	0.105		17			4	4
1d3x	------	E   |    H   |    B	8	nuc	NMR	circular line	0.155	45
						single-kink line	0.351		17			4	4
1d42	------	E   |    H   |    B	8	nuc	NMR	circular line	0.210	64
						straight line	0.305
1d70	------	E   |    H   |    B	8	nuc	NMR	circular line	0.078	42
						single-kink line	0.109		17			4	4
1d78	adh038	E   |    H   |    B	8	nuc	diff	circular line	0.088	56
						single-kink line	0.145		12			4	4
						straight line	0.276
1d79	adh039	E   |    H   |    B	8	nuc	diff	circular line	0.089	53
						single-kink line	0.150		13			4	4
1d90	adhb17	E   |    H   |    B	8	nuc	diff	circular line	0.247	31
						single-kink line	0.427		24			4	4
1d91	adh018	E   |    H   |    B	8	nuc	diff	circular line	0.190	31
						single-kink line	0.217		24			4	4
1d92	adh019	E   |    H   |    B	8	nuc	diff	circular line	0.291	24
						single-kink line	0.457		30			4	4
1d93	adh020	E   |    H   |    B	8	nuc	diff	circular line	0.113	67
						single-kink line	0.252		11			4	4
						straight line	0.291
1esg	pd0139	E   |    H   |    B	8	prot-nuc	diff	circular line	0.102	48
						single-kink line	0.202		17			4	4
1g3v	bd0042	E   |    H   |    B	8	nuc	diff	circular line	0.090	128
						straight line	0.115
						single-kink line	0.187		6			3	5
1g7z	------	E   |    H   |    B	8	nuc	NMR	circular line	0.126	108
						straight line	0.134
						single-kink line	0.237		7			4	4
1gat	------	E   |    H   |    B	8	prot-nuc	NMR	circular line	0.102	117
						single-kink line	0.127		7			5	3
						straight line	0.140
1gtc	------	E   |    H   |    B	8	nuc	NMR	circular line	0.036	42
						single-kink line	0.190		15			4	4
1guc	------	E   |    H   |    B	8	nuc	NMR	circular line	0.426	23
						single-kink line	0.499		29			4	4
1hry	------	E   |    H   |    B	8	prot-nuc	NMR	circular line	0.196	80
						straight line	0.341
1hrz	------	E   |    H   |    B	8	prot-nuc	NMR	circular line	0.118	82
						straight line	0.291
1mis	------	E   |    H   |    B	8	nuc	NMR	circular line	0.058	83
						straight line	0.107
						single-kink line	0.138		9			3	5
1n37	------	E   |    H   |    B	8	nuc	NMR	circular line	0.115	74
						single-kink line	0.194		13			4	4
1o9m	------	E   |    H   |    B	8	nuc	diff	circular line	0.367	40
						straight line	0.556
1qai	pd0126	E   |    H   |    B	8	prot-nuc	diff	circular line	0.398	43
						single-kink line	0.511		20			3	5
1qes	------	E   |    H   |    B	8	nuc	NMR	circular line	0.261	46
						straight line	0.319
1r3x	------	E   |    H   |    B	8	nuc	NMR	circular line	0.183	94
						straight line	0.220
						single-kink line	0.269		10			5	3
1rxb	arh064	E   |    H   |    B	8	nuc	diff	circular line	0.015	126
						single-kink line	0.035		6			3	5
						straight line	0.050
1s9m	------	E   |    H   |    B	8	prot-nuc	model	circular line	0.196	80
						straight line	0.340
1sx9	------	E   |    H   |    B	8	prot-nuc	model	circular line	0.196	80
						straight line	0.340
1vj4	------	E   |    H   |    B	8	nuc	diff	circular line	0.067	67
						straight line	0.211
						single-kink line	0.218		11			3	5
202d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.366	115
						straight line	0.366
204d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.344	75
						straight line	0.424
216d	ghhb34	E   |    H   |    B	8	nuc	diff	circular line	0.230	74
						straight line	0.412
243d	adh070	E   |    H   |    B	8	nuc	diff	circular line	0.050	113
						single-kink line	0.089		7			4	4
						straight line	0.105
246d	ahh071	E   |    H   |    B	8	nuc	diff	circular line	0.069	110
						straight line	0.081
						single-kink line	0.131		7			5	3
259d	arh074	E   |    H   |    B	8	nuc	diff	circular line	0.016	135
						single-kink line	0.029		5			4	4
						straight line	0.044
281d	adh076	E   |    H   |    B	8	nuc	diff	circular line	0.053	57
						single-kink line	0.193		13			3	5
2ana	adh006	E   |    H   |    B	8	nuc	diff	circular line	0.079	49
						single-kink line	0.173		14			4	4
2d95	adh027	E   |    H   |    B	8	nuc	diff	circular line	0.069	81
						single-kink line	0.124		8			4	4
						straight line	0.145
316d	ddh071	E   |    H   |    B	8	nuc	diff	circular line	0.231	96
						straight line	0.370
317d	adh078	E   |    H   |    B	8	nuc	diff	circular line	0.168	54
						single-kink line	0.307		13			4	4
333d	arhb90	E   |    H   |    B	8	nuc	diff	circular line	0.065	39
						single-kink line	0.097		16			4	4
344d	adhb99	E   |    H   |    B	8	nuc	diff	circular line	0.072	113
						straight line	0.115
						single-kink line	0.126		7			4	4
368d	adh0102	E   |    H   |    B	8	nuc	diff	circular line	0.095	41
						single-kink line	0.183		16			4	4
369d	adh0103	E   |    H   |    B	8	nuc	diff	circular line	0.210	71
						single-kink line	0.212		13			5	3
						straight line	0.243
372d	adh0106	E   |    H   |    B	8	nuc	diff	circular line	0.088	79
						single-kink line	0.176		9			4	4
						straight line	0.199
398d	ahh0114	E   |    H   |    B	8	nuc	diff	circular line	0.179	33
						single-kink line	0.348		20			4	4
3ana	adh007	E   |    H   |    B	8	nuc	diff	circular line	0.149	79
						straight line	0.184
						single-kink line	0.203		11			5	3
431d	bd0006	E   |    H   |    B	8	nuc	diff	circular line	0.039	113
						single-kink line	0.080		7			4	4
						straight line	0.127
432d	dd0002	E   |    H   |    B	8	nuc	diff	circular line	0.116	140
						straight line	0.128
						single-kink line	0.211		7			5	3
485d	ar0019	E   |    H   |    B	8	nuc	diff	circular line	0.526	24
						single-kink line	0.534		30			4	4
199d	------	E   |    H   |    B	9	nuc	NMR	circular line	0.137	75
						single-kink line	0.139		10			5	4
						straight line	0.231
1bc8	pd0020	E   |    H   |    B	9	prot-nuc	diff	circular line	0.094	131
						single-kink line	0.118		8			6	3
						straight line	0.150
1bps	------	E   |    H   |    B	9	nuc	NMR	circular line	0.410	34
						single-kink line	0.487		30			5	4
1dcr	bd0027	E   |    H   |    B	9	nuc	diff	circular line	0.301	46
						single-kink line	0.316		22			4	5
1hhx	------	E   |    H   |    B	9	nuc	NMR	circular line	0.105	82
						single-kink line	0.115		10			4	5
						straight line	0.178
1iu3	pd0297	E   |    H   |    B	9	prot-nuc	diff	circular line	0.217	105
						straight line	0.306
						single-kink line	0.359		8			5	4
1m97	------	E   |    H   |    B	9	prot-nuc	model	circular line	0.208	59
						single-kink line	0.400		14			4	5
1mjp	pd0247	E   |    H   |    B	9	prot-nuc	diff	circular line	0.105	64
						single-kink line	0.156		14			5	4
2bdp	pde0131	E   |    H   |    B	9	prot-nuc	diff	circular line	0.064	133
						single-kink line	0.075		8			6	3
						straight line	0.122
100d	ahj060	E   |    H   |    B	10	nuc	diff	circular line	0.416	24
						single-kink line	0.603		34			5	5
160d	adj049	E   |    H   |    B	10	nuc	diff	circular line	0.228	32
						single-kink line	0.270		27			5	5
161d	ahj052	E   |    H   |    B	10	nuc	diff	circular line	0.273	30
						single-kink line	0.354		29			5	5
167d	bdj055	E   |    H   |    B	10	nuc	diff	circular line	0.068	216
						single-kink line	0.076		7			7	2
						straight line	0.103
168d	ahjs55	E   |    H   |    B	10	nuc	diff	circular line	0.119	40
						single-kink line	0.185		20			5	5
175d	------	E   |    H   |    B	10	nuc	NMR	circular line	0.441	34
						single-kink line	0.464		29			5	5
1a1h	pdt057	E   |    H   |    B	10	prot-nuc	diff	circular line	0.182	147
						single-kink line	0.193		8			6	4
						straight line	0.229
1a1k	pdt058	E   |    H   |    B	10	prot-nuc	diff	circular line	0.083	164
						single-kink line	0.087		6			6	4
						straight line	0.140
1a1l	pdt061	E   |    H   |    B	10	prot-nuc	diff	circular line	0.208	105
						single-kink line	0.211		11			6	4
						straight line	0.346
1b0s	------	E   |    H   |    B	10	nuc	NMR	circular line	0.144	64
						single-kink line	0.215		15			5	5
1b1f	------	E   |    H   |    B	10	prot-nuc	model	circular line	0.155	94
						single-kink line	0.178		10			5	5
1bwt	------	E   |    H   |    B	10	nuc	NMR	circular line	0.077	83
						single-kink line	0.158		11			5	5
1cgc	bdj039	E   |    H   |    B	10	nuc	diff	circular line	0.067	336
						single-kink line	0.072		4			6	3
						straight line	0.073
1cvy	dd0021	E   |    H   |    B	10	nuc	diff	circular line	0.136	188
						single-kink line	0.153		6			5	5
						straight line	0.183

Abbreviations