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(-) Description

Title :  CRYSTAL STRUCTURE OF CAMPYLOBACTER JEJUNI CAS9 IN COMPLEX WITH SGRNA AND TARGET DNA (AGAAACA PAM)
 
Authors :  M. Yamada, Y. Watanabe, H. Hirano, T. Nakane, R. Ishitani, H. Nishimasu
Date :  31 Jan 17  (Deposition) - 29 Mar 17  (Release) - 29 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Crispr-Cas9, Rna, Dna, Complex, Nuclease, Hydrolase-Rna-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Yamada, Y. Watanabe, J. S. Gootenberg, H. Hirano, F. A. Ran, T. Nakane, R. Ishitani, F. Zhang, H. Nishimasu, O. Nureki
Crystal Structure Of The Minimal Cas9 From Campylobacter Jejuni Reveals The Molecular Diversity In The Crispr-Cas9 Systems
Mol. Cell V. 65 1109 2017
PubMed-ID: 28306506  |  Reference-DOI: 10.1016/J.MOLCEL.2017.02.007

(-) Compounds

Molecule 1 - CRISPR-ASSOCIATED ENDONUCLEASE CAS9
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-480, 642-984
    Gene: CAS9, CJ1523C
    Organism Taxid: 192222
    Other Details: CJCAS9-DHNH
    Strain: ATCC 700819 / NCTC 11168
 
Molecule 2 - SGRNA
    Chains: B
    Engineered: YES
    Organism Scientific: CAMPYLOBACTER JEJUNI
    Organism Taxid: 197
    Synthetic: YES
 
Molecule 3 - TARGET DNA STRAND
    Chains: C
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 4 - NON-TARGET DNA STRAND
    Chains: D
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:57 , G B:18 , G B:19 , HOH B:228 , HOH B:263binding site for residue EDO B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5X2H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5X2H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5X2H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5X2H)

(-) Exons   (0, 0)

(no "Exon" information available for 5X2H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:746
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...eeeeeeee..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......hhhhh....hhhhhhhhh.....hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh...hhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhheeehhhhhhhh...........eeeehhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhh..........hhhhhhhhhhhhhh..hhhhhhhhhh..............hhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhhh.eeee..eeee.....eeeeeee.....eeeeeehhhhhhhh....ee............ee....eeeeeeee...eeeee.......eeeeeeeee....eeeee.........hhhhhhhh........eeeeee.....eeeeeee.....eee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5x2h A   1 MARILAFDIGISSIGWAFSENDELKDCGVRIFTESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFISQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLVTPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELGGYIARLVLNYTKDYLDFLPLSDVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK 984
                                    10        20        30  ||    48        58        68        78        88        98       108       118       128       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       349       359       369       379       389       399       409       419       429       439       449       459       469       479||     648       658   ||  682       692       702       712   ||  768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928       938       948       958       968       978      
                                                           33|                                                                                           136|                                                                                                                                                                                                    339|                                                                                                                                 480|                   662|                                    716|                                                                                                                                                                                                                             
                                                            42                                                                                            140                                                                                                                                                                                                     348                                                                                                                                  640                    677                                     763                                                                                                                                                                                                                             


Chain B from PDB  Type:RNA  Length:93
                                                                                                                             
                 5x2h B   1 GGAAAUUAGGUGCGCUUGGCGUUUUAGUCCCUGAAAAGGGACUAAAAUAAAGAGUUUGCGGGACUCUGCGGGGUUACAAUCCCCUAAAACCGC  93
                                    10        20        30        40        50        60        70        80        90   


Chain C from PDB  Type:DNA  Length:28
                                                            
                 5x2h C  -7 CTGTTTCTGCCAAGCGCACCTAATTTCC  20
                                     2        12        


Chain D from PDB  Type:DNA  Length:8
                                        
                 5x2h D   1 AGAAACAG   8
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5X2H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5X2H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5X2H)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  CAS9_CAMJE | Q0P897
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 Related Entries

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UniProtKB/Swiss-Prot
        CAS9_CAMJE | Q0P897: 5x2g

(-) Related Entries Specified in the PDB File

5x2g