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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CAMPYLOBACTER JEJUNI CAS9 IN COMPLEX WI AND TARGET DNA (AGAAACA PAM)
Keywords CRISPR-CAS9, RNA, DNA, COMPLEX, NUCLEASE, HYDROLASE-RNA-DNA
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5X2H     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CRISPR-ASSOCIATED ENDONUCLEASE CAS9  A 746 5925 0
2  RNA    B 93 1990 0
3  Other macromolecule   TARGET DNA STRAND  C 28 560 0
4  Other macromolecule   NON-TARGET DNA STRAND  D 8 165 0
5  Ligand   SGRNA  B 1 0 4
6 Water     275 0 275
total       1151 8640 279
Proteins
Unit 1 MET1 ALA2 ARG3 ILE4 LEU5 ALA6 PHE7 ASP8 ILE9 GLY10 ILE11 SER12 SER13 ILE14 GLY15 TRP16 ALA17 PHE18 SER19 GLU20 ASN21 ASP22 GLU23 LEU24 LYS25 ASP26 CYS27 GLY28 VAL29 ARG30 ILE31 PHE32 THR33 GLU42 SER43 LEU44 ALA45 LEU46 PRO47 ARG48 ARG49 LEU50 ALA51 ARG52 SER53 ALA54 ARG55 LYS56 ARG57 LEU58 ALA59 ARG60 ARG61 LYS62 ALA63 ARG64 LEU65 ASN66 HIS67 LEU68 LYS69 HIS70 LEU71 ILE72 ALA73 ASN74 GLU75 PHE76 LYS77 LEU78 ASN79 TYR80 GLU81 ASP82 TYR83 GLN84 SER85 PHE86 ASP87 GLU88 SER89 LEU90 ALA91 LYS92 ALA93 TYR94 LYS95 GLY96 SER97 LEU98 ILE99 SER100 PRO101 TYR102 GLU103 LEU104 ARG105 PHE106 ARG107 ALA108 LEU109 ASN110 GLU111 LEU112 LEU113 SER114 LYS115 GLN116 ASP117 PHE118 ALA119 ARG120 VAL121 ILE122 LEU123 HIS124 ILE125 ALA126 LYS127 ARG128 ARG129 GLY130 TYR131 ASP132 ASP133 ILE134 LYS135 ASN136 LYS140 GLU141 LYS142 GLY143 ALA144 ILE145 LEU146 LYS147 ALA148 ILE149 LYS150 GLN151 ASN152 GLU153 GLU154 LYS155 LEU156 ALA157 ASN158 TYR159 GLN160 SER161 VAL162 GLY163 GLU164 TYR165 LEU166 TYR167 LYS168 GLU169 TYR170 PHE171 GLN172 LYS173 PHE174 LYS175 GLU176 ASN177 SER178 LYS179 GLU180 PHE181 THR182 ASN183 VAL184 ARG185 ASN186 LYS187 LYS188 GLU189 SER190 TYR191 GLU192 ARG193 CYS194 ILE195 ALA196 GLN197 SER198 PHE199 LEU200 LYS201 ASP202 GLU203 LEU204 LYS205 LEU206 ILE207 PHE208 LYS209 LYS210 GLN211 ARG212 GLU213 PHE214 GLY215 PHE216 SER217 PHE218 SER219 LYS220 LYS221 PHE222 GLU223 GLU224 GLU225 VAL226 LEU227 SER228 VAL229 ALA230 PHE231 TYR232 LYS233 ARG234 ALA235 LEU236 LYS237 ASP238 PHE239 SER240 HIS241 LEU242 VAL243 GLY244 ASN245 CYS246 SER247 PHE248 PHE249 THR250 ASP251 GLU252 LYS253 ARG254 ALA255 PRO256 LYS257 ASN258 SER259 PRO260 LEU261 ALA262 PHE263 MET264 PHE265 VAL266 ALA267 LEU268 THR269 ARG270 ILE271 ILE272 ASN273 LEU274 LEU275 ASN276 ASN277 LEU278 LYS279 ASN280 THR281 GLU282 GLY283 ILE284 LEU285 TYR286 THR287 LYS288 ASP289 ASP290 LEU291 ASN292 ALA293 LEU294 LEU295 ASN296 GLU297 VAL298 LEU299 LYS300 ASN301 GLY302 THR303 LEU304 THR305 TYR306 LYS307 GLN308 THR309 LYS310 LYS311 LEU312 LEU313 GLY314 LEU315 SER316 ASP317 ASP318 TYR319 GLU320 PHE321 LYS322 GLY323 GLU324 LYS325 GLY326 THR327 TYR328 PHE329 ILE330 GLU331 PHE332 LYS333 LYS334 TYR335 LYS336 GLU337 PHE338 ILE339 SER348 GLN349 ASP350 ASP351 LEU352 ASN353 GLU354 ILE355 ALA356 LYS357 ASP358 ILE359 THR360 LEU361 ILE362 LYS363 ASP364 GLU365 ILE366 LYS367 LEU368 LYS369 LYS370 ALA371 LEU372 ALA373 LYS374 TYR375 ASP376 LEU377 ASN378 GLN379 ASN380 GLN381 ILE382 ASP383 SER384 LEU385 SER386 LYS387 LEU388 GLU389 PHE390 LYS391 ASP392 HIS393 LEU394 ASN395 ILE396 SER397 PHE398 LYS399 ALA400 LEU401 LYS402 LEU403 VAL404 THR405 PRO406 LEU407 MET408 LEU409 GLU410 GLY411 LYS412 LYS413 TYR414 ASP415 GLU416 ALA417 CYS418 ASN419 GLU420 LEU421 ASN422 LEU423 LYS424 VAL425 ALA426 ILE427 ASN428 GLU429 ASP430 LYS431 LYS432 ASP433 PHE434 LEU435 PRO436 ALA437 PHE438 ASN439 GLU440 THR441 TYR442 TYR443 LYS444 ASP445 GLU446 VAL447 THR448 ASN449 PRO450 VAL451 VAL452 LEU453 ARG454 ALA455 ILE456 LYS457 GLU458 TYR459 ARG460 LYS461 VAL462 LEU463 ASN464 ALA465 LEU466 LEU467 LYS468 LYS469 TYR470 GLY471 LYS472 VAL473 HIS474 LYS475 ILE476 ASN477 ILE478 GLU479 LEU480 GLY640 GLY641 TYR642 ILE643 ALA644 ARG645 LEU646 VAL647 LEU648 ASN649 TYR650 THR651 LYS652 ASP653 TYR654 LEU655 ASP656 PHE657 LEU658 PRO659 LEU660 SER661 ASP662 VAL677 HIS678 VAL679 GLU680 ALA681 LYS682 SER683 GLY684 MET685 LEU686 THR687 SER688 ALA689 LEU690 ARG691 HIS692 THR693 TRP694 GLY695 PHE696 SER697 ALA698 LYS699 ASP700 ARG701 ASN702 ASN703 HIS704 LEU705 HIS706 HIS707 ALA708 ILE709 ASP710 ALA711 VAL712 ILE713 ILE714 ALA715 TYR716 ARG763 GLN764 LYS765 VAL766 LEU767 ASP768 LYS769 ILE770 ASP771 GLU772 ILE773 PHE774 VAL775 SER776 LYS777 PRO778 GLU779 ARG780 LYS781 LYS782 PRO783 SER784 GLY785 ALA786 LEU787 HIS788 GLU789 GLU790 THR791 PHE792 ARG793 LYS794 GLU795 GLU796 GLU797 PHE798 TYR799 GLN800 SER801 TYR802 GLY803 GLY804 LYS805 GLU806 GLY807 VAL808 LEU809 LYS810 ALA811 LEU812 GLU813 LEU814 GLY815 LYS816 ILE817 ARG818 LYS819 VAL820 ASN821 GLY822 LYS823 ILE824 VAL825 LYS826 ASN827 GLY828 ASP829 MET830 PHE831 ARG832 VAL833 ASP834 ILE835 PHE836 LYS837 HIS838 LYS839 LYS840 THR841 ASN842 LYS843 PHE844 TYR845 ALA846 VAL847 PRO848 ILE849 TYR850 THR851 MET852 ASP853 PHE854 ALA855 LEU856 LYS857 VAL858 LEU859 PRO860 ASN861 LYS862 ALA863 VAL864 ALA865 ARG866 SER867 LYS868 LYS869 GLY870 GLU871 ILE872 LYS873 ASP874 TRP875 ILE876 LEU877 MET878 ASP879 GLU880 ASN881 TYR882 GLU883 PHE884 CYS885 PHE886 SER887 LEU888 TYR889 LYS890 ASP891 SER892 LEU893 ILE894 LEU895 ILE896 GLN897 THR898 LYS899 ASP900 MET901 GLN902 GLU903 PRO904 GLU905 PHE906 VAL907 TYR908 TYR909 ASN910 ALA911 PHE912 THR913 SER914 SER915 THR916 VAL917 SER918 LEU919 ILE920 VAL921 SER922 LYS923 HIS924 ASP925 ASN926 LYS927 PHE928 GLU929 THR930 LEU931 SER932 LYS933 ASN934 GLN935 LYS936 ILE937 LEU938 PHE939 LYS940 ASN941 ALA942 ASN943 GLU944 LYS945 GLU946 VAL947 ILE948 ALA949 LYS950 SER951 ILE952 GLY953 ILE954 GLN955 ASN956 LEU957 LYS958 VAL959 PHE960 GLU961 LYS962 TYR963 ILE964 VAL965 SER966 ALA967 LEU968 GLY969 GLU970 VAL971 THR972 LYS973 ALA974 GLU975 PHE976 ARG977 GLN978 ARG979 GLU980 ASP981 PHE982 LYS983 LYS984
Nucleic acids
Unit 2 G1 G2 A3 A4 A5 U6 U7 A8 G9 G10 U11 G12 C13 G14 C15 U16 U17 G18 G19 C20 G21 U22 U23 U24 U25 A26 G27 U28 C29 C30 C31 U32 G33 A34 A35 A36 A37 G38 G39 G40 A41 C42 U43 A44 A45 A46 A47 U48 A49 A50 A51 G52 A53 G54 U55 U56 U57 G58 C59 G60 G61 G62 A63 C64 U65 C66 U67 G68 C69 G70 G71 G72 G73 U74 U75 A76 C77 A78 A79 U80 C81 C82 C83 C84 U85 A86 A87 A88 A89 C90 C91 G92 C93
Other macromolecules
Unit 3 DC-7 DT-6 DG-5 DT-4 DT-3 DT-2 DC-1 DT0 DG1 DC2 DC3 DA4 DA5 DG6 DC7 DG8 DC9 DA10 DC11 DC12 DT13 DA14 DA15 DT16 DT17 DT18 DC19 DC20
Unit 4 DA1 DG2 DA3 DA4 DA5 DC6 DA7 DG8
Ligands
Unit 5 EDO101
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany