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(-) Description

Title :  CRYSTAL STRUCTURE OF TOXT FROM VIBRIO CHOLERAE O395 BOUND TO 3-(8-METHYL-1,2,3,4-TETRAHYDRONAPHTHALEN-1-YL)PROPANOIC ACID
 
Authors :  F. J. Kull, A. R. Kelley
Date :  04 Aug 16  (Deposition) - 12 Apr 17  (Release) - 12 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Transcriptional Activator, Protein-Inhibitor Complex, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. J. Kull, A. R. Kelley
Crystal Structure Of Toxt From Vibrio Cholerae O395 Bound T 3-(8-Methyl-1, 2, 3, 4-Tetrahydronaphthalen-1-Yl)Propanoic Aci
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TCP PILUS VIRULENCE REGULATORY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TCPN, TOXT, VC0395_A0363, VC395_0854
    Organism Scientific: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 / CLASSICAL OGAWA 395 / O395)
    Organism Taxid: 345073
    Strain: ATCC 39541 / CLASSICAL OGAWA 395 / O395

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
170G1Ligand/Ion3-[(1R)-8-METHYL-1,2,3,4-TETRAHYDRONAPHTHALEN-1-YL]PROPANOIC ACID
2MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:12 , TYR A:20 , PHE A:22 , LEU A:25 , LYS A:31 , PHE A:33 , ILE A:226 , LYS A:230 , HOH A:408binding site for residue 70G A 301
2AC2SOFTWARETRP A:117 , ASN A:118 , TYR A:139 , LYS A:158binding site for residue MES A 302
3AC3SOFTWAREASN A:28 , ASP A:29 , LYS A:179 , TYR A:224 , SER A:227 , THR A:231binding site for residue MES A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5SUW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5SUW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5SUW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5SUW)

(-) Exons   (0, 0)

(no "Exon" information available for 5SUW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....eeeeeeee....eeeee....eeeee....eeeee...eeeee....eeeeeeee.....eeeeeeeehhhhhhhhhhhhh.hhhhhh.......eeeee.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh......hhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5suw A   4 KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILGDLMIRNLYSENKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG 272
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5SUW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5SUW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5SUW)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  5suw
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TCPN_VIBC3 | A5F384: 3gbg

(-) Related Entries Specified in the PDB File

3gbg 3GBG CONTAINS THE SAME PROTEIN COMPLEXED WITH THE LIGAND PAM.
5sux