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(-) Description

Title :  CRYSTAL STRUCTURE OF A SEC72-SSA1 C-TERMINAL PEPTIDE FUSION PROTEIN
 
Authors :  A. Tripathi, T. A. Rapoport
Date :  28 Jul 16  (Deposition) - 22 Mar 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.87
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,M  (1x)
Biol. Unit 3:  C,I  (1x)
Biol. Unit 4:  D,L  (1x)
Biol. Unit 5:  E,H  (1x)
Biol. Unit 6:  F,J  (1x)
Biol. Unit 7:  G,K  (1x)
Keywords :  Protein Translocation, Tpr, C-Terminal Ssa1 Peptide, Peptide Binding Protein, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Tripathi, E. C. Mandon, R. Gilmore, T. A. Rapoport
Two Alternative Binding Mechanisms Connect The Protein Translocation Sec71-Sec72 Complex With Heat Shock Proteins.
J. Biol. Chem. V. 292 8007 2017
PubMed-ID: 28286332  |  Reference-DOI: 10.1074/JBC.M116.761122

(-) Compounds

Molecule 1 - SEC72-SSA1 C-TERMINAL PEPTIDE FUSION PROTEIN
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneCTHT_0068610
    Organism ScientificCHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719), SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid759272, 559292
    StrainDSM 1495 / CBS 144.50 / IMI 039719
 
Molecule 2 - PRO-THR-VAL-GLU-GLU-VAL-ASP
    ChainsI, J, K, L, M
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificCHAETOMIUM THERMOPHILUM
    Organism Taxid209285

 Structural Features

(-) Chains, Units

  12345678910111213
Asymmetric Unit ABCDEFGHIJKLM
Biological Unit 1 (1x)A  D         
Biological Unit 2 (1x) B          M
Biological Unit 3 (1x)  C     I    
Biological Unit 4 (1x)   D       L 
Biological Unit 5 (1x)    E  H     
Biological Unit 6 (1x)     F   J   
Biological Unit 7 (1x)      G   K  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5L0Y)

(-) Sites  (0, 0)

(no "Site" information available for 5L0Y)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L0Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5L0Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L0Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L0Y)

(-) Exons   (0, 0)

(no "Exon" information available for 5L0Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l0y A  68 VNPKRSANINKLRESGNAEYRKQRYGDAIKLYTLGLQMALTRPAWEPAGLVRDEIHQLYSNRAQAYMQLGQWPEAAADAECSVEAKRQGNAKAWYRRGKCLMEMRRLQEAREWVARGLEFEGEEKELAELLKEIDSKLAAEKASRDAHPTVEEVD 226
                                    77        87        97       107       117       127       137       147       157       167       177       187       197       207       221     
                                                                                                                                                                             215|      
                                                                                                                                                                              220      

Chain B from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l0y B  68 VNPKRSANINKLRESGNAEYRKQRYGDAIKLYTLGLQMALTRPAWEPAGLVRDEIHQLYSNRAQAYMQLGQWPEAAADAECSVEAKRQGNAKAWYRRGKCLMEMRRLQEAREWVARGLEFEGEEKELAELLKEIDSKLAAEKASRDAHD 216
                                    77        87        97       107       117       127       137       147       157       167       177       187       197       207         

Chain C from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l0y C  68 VNPKRSANINKLRESGNAEYRKQRYGDAIKLYTLGLQMALTRPAWEPAGLVRDEIHQLYSNRAQAYMQLGQWPEAAADAECSVEAKRQGNAKAWYRRGKCLMEMRRLQEAREWVARGLEFEGEEKELAELLKEIDSKLAAEKASRDAHDN 217
                                    77        87        97       107       117       127       137       147       157       167       177       187       197       207       217

Chain D from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l0y D  74 ANINKLRESGNAEYRKQRYGDAIKLYTLGLQMALTRPAWEPAGLVRDEIHQLYSNRAQAYMQLGQWPEAAADAECSVEAKRQGNAKAWYRRGKCLMEMRRLQEAREWVARGLEFEEEKELAELLKEIDSKLAAEKASRDAHDNPTVEEVD 226
                                    83        93       103       113       123       133       143       153       163       173       183    || 194       204       214  ||   226
                                                                                                                                            188|                        217|      
                                                                                                                                             190                         220      

Chain E from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l0y E  70 PKRSANINKLRESGNAEYRKQRYGDAIKLYTLGLQMALTRPAWEPAGLVRDEIHQLYSNRAQAYMQLGQWPEAAADAECSVEAKRQGNAKAWYRRGKCLMEMRRLQEAREWVARGLEFEEKELAELLKEIDSKLAAEKASRDAHPTVEEVD 226
                                    79        89        99       109       119       129       139       149       159       169       179       191       201       211   ||  225 
                                                                                                                                                188|                     215|      
                                                                                                                                                 191                      220      

Chain F from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l0y F  73 SANINKLRESGNAEYRKQRYGDAIKLYTLGLQMALTRPAWEPAGLVRDEIHQLYSNRAQAYMQLGQWPEAAADAECSVEAKRQGNAKAWYRRGKCLMEMRRLQEAREWVARGLEFEEEKELAELLKEIDSKLAAEKASRD 213
                                    82        92       102       112       122       132       142       152       162       172       182     ||193       203       213
                                                                                                                                             188|                       
                                                                                                                                              190                       

Chain G from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l0y G  68 VNPKRSANINKLRESGNAEYRKQRYGDAIKLYTLGLQMALTRPAWEPAGLVRDEIHQLYSNRAQAYMQLGQWPEAAADAECSVEAKRQGNAKAWYRRGKCLMEMRRLQEAREWVARGLEFKELAELLKEIDSKLAAEKASRDAH 215
                                    77        87        97       107       117       127       137       147       157       167       177       187|      201       211    
                                                                                                                                                 187|                       
                                                                                                                                                  192                       

Chain H from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l0y H  71 KRSANINKLRESGNAEYRKQRYGDAIKLYTLGLQMALTRPAWEPRDEIHQLYSNRAQAYMQLGQWPEAAADAECSVEAKRQGNAKAWYRRGKCLMEMRRLQEAREWVARGLEFEEKELAELLKEIDSKLAAEK 209
                                    80        90       100       110   ||  124       134       144       154       164       174       184   ||  196       206   
                                                                     114|                                                                  188|                  
                                                                      119                                                                   191                  

Chain I from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 5l0y I 221 TVEEVD 226

Chain J from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 5l0y J 220 PTVEEVD 226

Chain K from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 5l0y K 220 PTVEEVD 226

Chain L from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 5l0y L 221 TVEEVD 226

Chain M from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 5l0y M 222 VEEVD 226

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L0Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L0Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L0Y)

(-) Gene Ontology  (2, 2)

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