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(-)Asym./Biol. Unit
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(-) Description

Title :  STRUCTURE OF POST-TRANSLATIONAL TRANSLOCATION SEC71/SEC72 COMPLEX
 
Authors :  A. Tripathi, T. A. Rapoport
Date :  28 Jul 16  (Deposition) - 22 Mar 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.04
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein Translocation, Tpr Domain, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Tripathi, E. C. Mandon, R. Gilmore, T. A. Rapoport
Two Alternative Binding Mechanisms Connect The Protein Translocation Sec71-Sec72 Complex With Heat Shock Proteins.
J. Biol. Chem. V. 292 8007 2017
PubMed-ID: 28286332  |  Reference-DOI: 10.1074/JBC.M116.761122

(-) Compounds

Molecule 1 - SEC72
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 209285
 
Molecule 2 - SEC71
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 48-202
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 209285
    Synonym: TRANSLOCATION PROTEIN (SEC66)-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5L0W)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L0W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5L0W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L0W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L0W)

(-) Exons   (0, 0)

(no "Exon" information available for 5L0W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l0w A  23 NLYFQGSHLQRNIYLSLLHMEPEEGQEKAPKVPDSVIRAALLRRAVEDIHRIIQIRTAKAACSTLLQRGSVGDDLWQRFLRAEKEmEDELRDVVmEANALVPGWGQIIFQSANEIAANKVLRDRLEEIEAQTARDKEWWEKRRATIKSEFMKELDAEEAVEK 184
                                    32        42        52        62        72        82        92       102     | 112    |  122       132       142       152       162       172       182  
                                                                                                               108-MSE  117-MSE                                                               


Chain B from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee......eee......hhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l0w B   5 DTFTFIPLHIDPKSKAISAAPNALGTPSANKALETELAALNALHRALHTQIEGPIPVPPPPVPVNPKRSANINKLRESGNAEYRKQRYGDAIKLYTLGLQmALTRPAWEPAGLVRDEIHQLYSNRAQAYmQLGQWPEAAADAECSVEAKRQGNAKAWYRRGKCLmEmRRLQEAREWVARGLEFEGEEKELAELLKEIDSKLAAEKASRD 213
                                    14        24        34        44        54        64        74        84        94       104|      114       124       134       144       154       164    | |174       184       194       204         
                                                                                                                              105-MSE                      134-MSE                            169-MSE                                        
                                                                                                                                                                                                171-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L0W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L0W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L0W)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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