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(-) Description

Title :  CRYSTAL STRUCTURE OF ACETYL-COA SYNTHETASE IN COMPLEX WITH ADENOSINE-5'-PROPYLPHOSPHATE AND COENZYME A FROM CRYPTOCOCCUS NEOFORMANS H99
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S D. Fox Iii, S. L. Delker, K. T. Potts, D. D. Lorimer, T. E. Edwards, M. W. Ssgcid
Date :  27 May 16  (Deposition) - 17 Aug 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Ssgcid, Nih, Niaid, Synthetase, Acs1, Acetyl-Coa, Prx, Propyl-Amp, Coenzyme A, Coa, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid), Ssgcid, D. Fox Iii, S. L. Delker, K. T. Potts, M. M. Numa, T. E. Edwards, D. D. Lorimer, M. W. Mutz, D. J. Krysan
Crystal Structure Of Acetyl-Coa Synthetase In Complex With Adenosine-5'-Propylphosphate And Coenzyme A From Cryptococcus Neoformans H99
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETYL-COENZYME A SYNTHETASE
    Atcc: 208821
    Chains: A, B, C
    EC Number: 6.2.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEMB7013
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CNAG_00797
    Organism Scientific: CRYPTOCOCCUS NEOFORMANS VAR. GRUBII SEROTYPE A (STRAIN H99 / ATCC 208821 / CBS 10515 / FGSC 9487)
    Organism Taxid: 235443
    Strain: H99 / ATCC 208821 / CBS 10515 / FGSC 9487

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric Unit (4, 15)
No.NameCountTypeFull Name
1COA1Ligand/IonCOENZYME A
2EDO10Ligand/Ion1,2-ETHANEDIOL
3PO41Ligand/IonPHOSPHATE ION
4PRX3Ligand/IonADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1COA-1Ligand/IonCOENZYME A
2EDO7Ligand/Ion1,2-ETHANEDIOL
3PO4-1Ligand/IonPHOSPHATE ION
4PRX1Ligand/IonADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1COA-1Ligand/IonCOENZYME A
2EDO2Ligand/Ion1,2-ETHANEDIOL
3PO41Ligand/IonPHOSPHATE ION
4PRX1Ligand/IonADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER
Biological Unit 3 (3, 3)
No.NameCountTypeFull Name
1COA1Ligand/IonCOENZYME A
2EDO1Ligand/Ion1,2-ETHANEDIOL
3PO4-1Ligand/IonPHOSPHATE ION
4PRX1Ligand/IonADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:334 , THR A:336 , VAL A:411 , GLY A:412 , GLU A:413 , PRO A:414 , ASP A:436 , THR A:437 , TYR A:438 , TRP A:439 , MET A:440 , THR A:441 , ASP A:527 , ARG A:542 , HOH A:820 , HOH A:885 , HOH A:948 , HOH A:997 , HOH A:1014binding site for residue PRX A 701
02AC2SOFTWAREILE A:44 , GLY A:45 , SER A:50 , HOH A:1026binding site for residue EDO A 702
03AC3SOFTWAREARG A:72 , TRP A:77 , ASP A:80 , HOH A:942binding site for residue EDO A 703
04AC4SOFTWAREGLU A:139 , GLU A:143binding site for residue EDO A 704
05AC5SOFTWAREALA A:320 , HIS A:321 , PRO A:322 , ASN A:348 , HOH A:983binding site for residue EDO A 705
06AC6SOFTWAREPRO A:29 , ASN A:47 , TYR A:48 , ALA A:454 , ILE A:455 , SER A:456 , HOH A:819binding site for residue EDO A 706
07AC7SOFTWAREASP A:76 , TRP A:77 , TYR A:78binding site for residue EDO A 707
08AC8SOFTWAREHIS A:43 , LYS A:315 , TYR A:316binding site for residue EDO A 708
09AC9SOFTWAREHIS B:43 , LYS B:315 , HOH B:1018binding site for residue PO4 B 701
10AD1SOFTWARETRP B:334 , THR B:336 , GLY B:412 , GLU B:413 , PRO B:414 , ASP B:436 , THR B:437 , TYR B:438 , TRP B:439 , MET B:440 , THR B:441 , ASP B:527 , ARG B:542 , HOH B:853 , HOH B:957 , HOH B:962binding site for residue PRX B 702
11AD2SOFTWARESER B:607 , ALA B:611 , PRO B:624 , LYS B:625 , HOH B:807binding site for residue EDO B 703
12AD3SOFTWAREASP B:76 , TRP B:77 , TYR B:106 , LYS C:82binding site for residue EDO B 704
13AD4SOFTWAREPHE C:190 , ARG C:218 , ALA C:330 , ASP C:331 , TRP C:334 , THR C:336 , PRO C:359 , SER C:550 , HIS C:552 , ARG C:615 , PRO C:620 , PHE C:621binding site for residue COA C 801
14AD5SOFTWARETHR C:336 , GLY C:412 , GLU C:413 , PRO C:414 , ASP C:436 , THR C:437 , TYR C:438 , TRP C:439 , MET C:440 , THR C:441 , ASP C:527 , ILE C:539 , ARG C:542 , ARG C:553binding site for residue PRX C 802
15AD6SOFTWAREASP C:76 , TRP C:77 , TYR C:78binding site for residue EDO C 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K85)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Gly A:45 -Pro A:46
2Tyr A:361 -Pro A:362
3Gly B:45 -Pro B:46
4Tyr B:361 -Pro B:362
5Gly C:45 -Pro C:46
6Tyr C:361 -Pro C:362

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K85)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K85)

(-) Exons   (0, 0)

(no "Exon" information available for 5K85)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:652
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh....hhhhh............hhhhhhhhhhhhh...hhhhhhhhhhhhh.........ee........ee....eehhhhhhhhhhhhhh...eeeeee..hhhhheeeehhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..eeeee..eee..eeehhhhhhhhhhhhh....eeeee.............eeehhhhhh..........ee...eeeeeee....eeeeeehhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhh..eeeehhhhhhhhhhh.hhhhhh.......eeee.....hhhhhhhhhhhh.....eeee...hhhhh..........................eeee............eeeeeee.........ee..hhhhhhhhhh......eeeeeeeee.....eeeeee.hhheee..eeehhhhhhhhhh....eeeeeeeeeee...eeeeeeeeee.........hhhhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k85 A  10 VHHVHPLPDSVPESEDLFAPPPRMQGKEGRPKPHIGPNYESYVKEWAKTVGPNSDEWWAAKARETLDWYDDFKTVRAGGFEHGDVQWFPEGTLNAAYNCLDRHYYKNPKKTAIIYEADEPSESREVSYEELMQETCRVANVLKSYGVKKGDAVSIYLPMTWQAAAAFLACARIGAIHSAVFAGFSAESLRDRVNDCECKVLITTDEGRRGGKTIATKQIVDAALQQCPLVENVLVLRRTGNKVPMTEGRDKWWDEECAKMPAYCPCERMASEDPLFILYTSGKPKGVVHSTAGYLLGTALTLKYVFDAHPDDRFACMADIGWITGHSYIIYGPLANGITTAVFESTPVYPTPSRYWDFVDKWKATQLYTAPTAIRLLRRMGEDHVKNHDLSSLRVLGSVGEPINPEAWHWYNDFAGKNQCAIVDTYWMTETGSISIAPLPGAISTKPGSATFPFFGMDVDIIDPQTGQVLEGNDVEGVLVARRPWPSIARTVYRDHKRYLETYMKPYPGYFFFGDGAARDYDGYMWIKGRVDDVINVSGHRLSTAEVESALILHKGVAETAVVGCADDLTGQAVYAFVTMKPEFDLKATKEADLSKELAIQVRKVIGPFAAPKKIYLVSDLPKTRSGKIMRRVLRKIVAGPQIVEEVKQKVT 681
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289||     302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652|      679  
                                                                                                                                                                                                                                                                                                                  290|                                                                                                                                                                                                                                                                                                                                                                   652|           
                                                                                                                                                                                                                                                                                                                   294                                                                                                                                                                                                                                                                                                                                                                    670           


Chain B from PDB  Type:PROTEIN  Length:647
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhh....hhhhh............hhhhhhhhhhhhh...hhhhhhhhhhhhh.........ee........ee....eehhhhhhhhhhhhhh...eeeeee..hhhhheeeehhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..eeeee..eee..eeehhhhhhhhhhh......eeeee.............eeehhhhhhh.........ee...eeeeeee....eeeeeehhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh.....eeeee..hhhhh..........................eeee............eeeeeee.........ee..hhhhhhhhhh......eeeeeeeee.....eeeeee.hhheee..eeehhhhhhhhhh....eeeeeeeeeee...eeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhh..eeee............hhhhhhhhhh.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k85 B  11 HHVHPLPDSVPESEDLFAPPPRMQGKEGRPKPHIGPNYESYVKEWAKTVGPNSDEWWAAKARETLDWYDDFKTVRAGGFEHGDVQWFPEGTLNAAYNCLDRHYYKNPKKTAIIYEADEPSESREVSYEELMQETCRVANVLKSYGVKKGDAVSIYLPMTWQAAAAFLACARIGAIHSAVFAGFSAESLRDRVNDCECKVLITTDEGRRGGKTIATKQIVDAALQQCPLVENVLVLRRTGNKVPMTEGRDKWWDEECAKMPAYCPCERMASEDPLFILYTSGKPKGVVHSTAGYLLGTALTLKYVFDAHPDDRFACMADIGWITGHSYIIYGPLANGITTAVFESTPVYPTPSRYWDFVDKWKATQLYTAPTAIRLLRRMGEDHVKNHDLSSLRVLGSVGEPINPEAWHWYNDFAGKNQCAIVDTYWMTETGSISIAPLPGAISTKPGSATFPFFGMDVDIIDPQTGQVLEGNDVEGVLVARRPWPSIARTVYRDHKRYLETYMKPYPGYFFFGDGAARDYDGYMWIKGRVDDVINVSGHRLSTAEVESALILHKGVAETAVVGCADDLTGQAVYAFVTMKPEFDLKEADLSKELAIQVRKVIGPFAAPKKIYLVSDLPKTRSGKIMRRVLRKIVAPQIVEEVKQKVT 681
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290|      303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593    || 606       616       626       636       646    || 674       
                                                                                                                                                                                                                                                                                                                 290|                                                                                                                                                                                                                                                                                                             598|                                              651|           
                                                                                                                                                                                                                                                                                                                  294                                                                                                                                                                                                                                                                                                              602                                               670           


Chain C from PDB  Type:PROTEIN  Length:584
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh........hhhhhhhhhh......hhhhhhhhhhhhh.........ee........ee....eehhhhhhhhhhhhhh...eeeeee..hhhhheeeehhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..eeeee..eee..eeehhhhhhhhhhh......eeeee.............eeehhhhhh..........ee.....eeeee.......eeeee.hhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh.........eeeee....hhhhhhhhhhh......eeeee..hhhhh..........................eeee............eeeeeee.........ee..hhhhhhhhhh......eeeeeeeee.....eeeeee...eeee..eeeehhhhhhhhhh...eeeeeee...eeeeee...hhhhhhhhhhhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k85 C  25 DLFAPPPRMQGRPKPHIGPNYESYVKEWAKTVGPNSDEWWAAKARETLDWYDDFKTVRAGGFEHGDVQWFPEGTLNAAYNCLDRHYYKNPKKTAIIYEADEPSESREVSYEELMQETCRVANVLKSYGVKKGDAVSIYLPMTWQAAAAFLACARIGAIHSAVFAGFSAESLRDRVNDCECKVLITTDEGRRGGKTIATKQIVDAALQQCPLVENVLVLRRTGNKVPMTEGRDKWWDEECAKMPAYCPCERMASEDPLFILYTSGSTGKPKGVVHSTAGYLLGTALTLKYVFDAHPDDRFACMADIGWITGHSYIIYGPLANGITTAVFESTPVYPTPSRYWDFVDKWKATQLYTAPTAIRLLRRMGEDHVKNHDLSSLRVLGSVGEPINPEAWHWYNDFAGKNQCAIVDTYWMTETGSISIAPLPGAISTKPGSATFPFFGMDVDIIDPQTGQVLEGNDVEGVLVARRPWPSIARTVYRDHKRYLETYMKPYPGYFFFGDGAARDYDGYMWIKGRVDDVINVSGHRLSTAEVESALILHKGVAETAVVGAVYAFVTMKPLSKELAIQVRKVIGPFAAPKKIYLV 630
                                    34||      47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       585       606       616       626    
                                     35|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      576|      594|                        
                                      39                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       585       606
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K85)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K85)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K85)

(-) Gene Ontology  (8, 8)

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  5k85
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        J9VFT1_CRYNH | J9VFT1: 5vpv
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        J9VFT1_CRYNH | J9VFT1: 5ifi 5k8f

(-) Related Entries Specified in the PDB File

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