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(-) Description

Title :  CRYSTAL STRUCTURE OF ACETYL-COA SYNTHETASE IN COMPLEX WITH ADENOSINE-5'-PROPYLPHOSPHATE FROM CRYPTOCOCCUS NEOFORMANS H99
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S Ssgcid, D. Fox Iii, T. E. Edwards, D. D. Lorimer, M. W. Mutz
Date :  26 Feb 16  (Deposition) - 16 Mar 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Ssgcid, Nih, Niaid, Sbri, Uw, Beryllium, Synthetase, Acs1, Prx, Propyl-Amp, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid), Ssgcid, D. Fox Iii, T. E. Edwards, K. T. Potts, D. D. Lorimer M. W. Mutz, M. M. Numa
Crystal Structure Of Acetyl-Coa Synthetase In Complex With Adenosine-5'-Propylphosphate From Cryptococcus Neoformans H99
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETYL-COENZYME A SYNTHETASE
    Atcc208821
    ChainsA, B, C
    EC Number6.2.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPEMB7013
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneCNAG_00797
    Organism ScientificCRYPTOCOCCUS NEOFORMANS VAR. GRUBII SEROTYPE A (STRAIN H99 / ATCC 208821 / CBS 10515 / FGSC 9487)
    Organism Taxid235443
    StrainH99 / ATCC 208821 / CBS 10515 / FGSC 9487

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (1x)A  
Biological Unit 2 (1x) B 
Biological Unit 3 (1x)  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 25)

Asymmetric Unit (3, 25)
No.NameCountTypeFull Name
1EDO18Ligand/Ion1,2-ETHANEDIOL
2PO44Ligand/IonPHOSPHATE ION
3PRX3Ligand/IonADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER
Biological Unit 1 (2, 11)
No.NameCountTypeFull Name
1EDO10Ligand/Ion1,2-ETHANEDIOL
2PO4-1Ligand/IonPHOSPHATE ION
3PRX1Ligand/IonADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER
Biological Unit 2 (3, 11)
No.NameCountTypeFull Name
1EDO6Ligand/Ion1,2-ETHANEDIOL
2PO44Ligand/IonPHOSPHATE ION
3PRX1Ligand/IonADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2PO4-1Ligand/IonPHOSPHATE ION
3PRX1Ligand/IonADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:334 , ILE A:335 , THR A:336 , GLY A:412 , GLU A:413 , PRO A:414 , ASP A:436 , THR A:437 , TYR A:438 , TRP A:439 , MET A:440 , THR A:441 , ASP A:527 , ILE A:539 , ARG A:542 , HOH A:815 , HOH A:820 , HOH A:951 , HOH A:992 , HOH A:1006 , HOH A:1032 , HOH A:1052binding site for residue PRX A 701
02AC2SOFTWAREGLY A:45 , SER A:50 , HOH A:1028binding site for residue EDO A 702
03AC3SOFTWARETYR A:48 , TYR A:51 , TRP A:55 , PHE A:464 , PRO A:465binding site for residue EDO A 703
04AC4SOFTWAREARG A:72 , TRP A:77 , ASP A:80 , HOH A:928binding site for residue EDO A 704
05AC5SOFTWAREGLU A:139 , GLU A:143 , TRP A:170 , HOH A:808 , HOH A:953binding site for residue EDO A 705
06AC6SOFTWAREALA A:320 , HIS A:321 , PRO A:322 , ASN A:348 , HOH A:891 , HOH A:947binding site for residue EDO A 706
07AC7SOFTWAREPRO A:29 , ASN A:47 , TYR A:48 , ALA A:454 , ILE A:455 , SER A:456 , HOH A:1071binding site for residue EDO A 707
08AC8SOFTWAREASP A:76 , TRP A:77 , TYR A:78binding site for residue EDO A 708
09AC9SOFTWAREGLY A:60 , PRO A:61 , ASP A:64 , ARG A:85binding site for residue EDO A 709
10AD1SOFTWARETYR A:124 , THR A:169 , TRP A:170 , GLN A:171 , ARG A:247 , HOH A:804 , HOH A:859binding site for residue EDO A 710
11AD2SOFTWAREHIS A:43 , LYS A:315 , TYR A:316binding site for residue EDO A 711
12AD3SOFTWARETRP B:334 , THR B:336 , GLY B:412 , GLU B:413 , PRO B:414 , ASP B:436 , THR B:437 , TYR B:438 , TRP B:439 , MET B:440 , THR B:441 , ASP B:527 , ARG B:542 , HOH B:927 , HOH B:1004 , HOH B:1017 , HOH B:1114binding site for residue PRX B 701
13AD4SOFTWARELYS B:315 , ALA B:320 , PRO B:322 , ASN B:348 , ILE B:350binding site for residue PO4 B 702
14AD5SOFTWAREHIS B:43 , LYS B:315binding site for residue PO4 B 703
15AD6SOFTWAREHIS B:43 , ILE B:44 , GLY B:45 , HOH B:837 , HOH B:860binding site for residue PO4 B 704
16AD7SOFTWARELYS B:297 , ARG B:510 , THR B:514binding site for residue PO4 B 705
17AD8SOFTWARESER B:23 , GLU B:24 , ASP B:25 , LEU B:26binding site for residue EDO B 706
18AD9SOFTWAREPRO B:29 , ASN B:47 , TYR B:48 , ALA B:454 , SER B:456 , HOH B:867binding site for residue EDO B 707
19AE1SOFTWAREASP B:160 , ALA B:161 , CYS B:205 , GLU B:206 , TYR B:505 , HOH B:890binding site for residue EDO B 708
20AE2SOFTWARESER B:607 , ALA B:611 , PRO B:624 , HOH B:864 , HOH B:865 , HOH B:870binding site for residue EDO B 709
21AE3SOFTWAREGLU B:65 , TRP B:66 , HOH B:917binding site for residue EDO B 710
22AE4SOFTWARELYS B:152 , CYS B:273 , PRO B:274 , GLU B:276 , HOH C:888binding site for residue EDO B 711
23AE5SOFTWARETHR C:336 , GLY C:412 , GLU C:413 , PRO C:414 , ASP C:436 , THR C:437 , TYR C:438 , TRP C:439 , MET C:440 , THR C:441 , ASP C:527 , ILE C:539 , ARG C:542 , ARG C:553binding site for residue PRX C 701
24AE6SOFTWAREGLU A:99 , ASP C:76 , TRP C:77 , TYR C:78 , TYR C:106binding site for residue EDO C 702
25AE7SOFTWARETYR C:154 , ASN C:241 , VAL C:242 , GLY C:257 , ARG C:258 , LYS C:260 , HOH C:801binding site for residue EDO C 703

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IFI)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Gly A:45 -Pro A:46
2Tyr A:361 -Pro A:362
3Gly B:45 -Pro B:46
4Tyr B:361 -Pro B:362
5Gly C:45 -Pro C:46
6Tyr C:361 -Pro C:362

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IFI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IFI)

(-) Exons   (0, 0)

(no "Exon" information available for 5IFI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:650
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhh....hhhhh............hhhhhhhhhhhhh...hhhhhhhhhhhhh.........ee........ee....eehhhhhhhhhhhhhh...eeeeee..hhhhheeeehhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhh..eeeee..eee..eeehhhhhhhhhhh......eeeee.............eeehhhhhhh.........ee...eeeeeee...eeeeeehhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhh..eeeehhhhhhhhhh..hhhhhh.......eeee.....hhhhhhhhhhhh.....eeee...hhhhh..........................eeee............eeeeeee.........ee..hhhhhhhhhh......eeeeeeeee.....eeeeee.hhheee..eeehhhhhhhhhhh...eeeeeeeeeee...eeeeeeeeee.........hhhhhhhhhhhhhhhhhhhhhh..eeee............hhhhhhhhhhh.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ifi A  11 HHVHPLPDSVPESEDLFAPPPRMQGKEGRPKPHIGPNYESYVKEWAKTVGPNSDEWWAAKARETLDWYDDFKTVRAGGFEHGDVQWFPEGTLNAAYNCLDRHYYKNPKKTAIIYEADEPSESREVSYEELMQETCRVANVLKSYGVKKGDAVSIYLPMTWQAAAAFLACARIGAIHSAVFAGFSAESLRDRVNDCECKVLITTDEGRRGGKTIATKQIVDAALQQCPLVENVLVLRRTGNKVPMTEGRDKWWDEECAKMPAYCPCERMASEDPLFILYTSKPKGVVHSTAGYLLGTALTLKYVFDAHPDDRFACMADIGWITGHSYIIYGPLANGITTAVFESTPVYPTPSRYWDFVDKWKATQLYTAPTAIRLLRRMGEDHVKNHDLSSLRVLGSVGEPINPEAWHWYNDFAGKNQCAIVDTYWMTETGSISIAPLPGAISTKPGSATFPFFGMDVDIIDPQTGQVLEGNDVEGVLVARRPWPSIARTVYRDHKRYLETYMKPYPGYFFFGDGAARDYDGYMWIKGRVDDVINVSGHRLSTAEVESALILHKGVAETAVVGCADDLTGQAVYAFVTMKPEFDLKATKEADLSKELAIQVRKVIGPFAAPKKIYLVSDLPKTRSGKIMRRVLRKIVAGPQIVEEVKQKVT 681
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290|      304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       671       681
                                                                                                                                                                                                                                                                                                                 290|                                                                                                                                                                                                                                                                                                                                                                  652|           
                                                                                                                                                                                                                                                                                                                  295                                                                                                                                                                                                                                                                                                                                                                   670           

Chain B from PDB  Type:PROTEIN  Length:642
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhh....hhhhh............hhhhhhhhhhh.....hhhhhhhhhhhhh.........ee........ee....eehhhhhhhhhhhhhh...eeeeee..hhhhheeeehhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhh..eeeee..eee..eeehhhhhhhhhhh......eeeee.............eeehhhhhhh.........ee...eeeeeee...eeeeeehhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh.........eeee.....hhhhhhhhhhhh.....eeee...hhhhh..........................eeeee....ee.....eeeeeee.........ee..hhhhhhhhhh......eeeeeeeee.....eeeeee.hhheee..eeehhhhhhhhhh....eeeeeeeeeee...eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh..eeee............hhhhhhhhhh.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ifi B  11 HHVHPLPDSVPESEDLFAPPPRMQGKEGRPKPHIGPNYESYVKEWAKTVGPNSDEWWAAKARETLDWYDDFKTVRAGGFEHGDVQWFPEGTLNAAYNCLDRHYYKNPKKTAIIYEADEPSESREVSYEELMQETCRVANVLKSYGVKKGDAVSIYLPMTWQAAAAFLACARIGAIHSAVFAGFSAESLRDRVNDCECKVLITTDEGRRGGKTIATKQIVDAALQQCPLVENVLVLRRTGNKVPMTEGRDKWWDEECAKMPAYCPCERMASEDPLFILYTSKPKGVVHSTAGYLLGTALTLKYVFDAHPDDRFACMADIGWITGHSYIIYGPLANGITTAVFESTPVYPTPSRYWDFVDKWKATQLYTAPTAIRLLRRMGEDHVKNHDLSSLRVLGSVGEPINPEAWHWYNDFAGKNQCAIVDTYWMTETGSISIAPLPGAISTKPGSATFPFFGMDVDIIDPQTGQVLEGNDVEGVLVARRPWPSIARTVYRDHKRYLETYMKPYPGYFFFGDGAARDYDGYMWIKGRVDDVINVSGHRLSTAEVESALILHKGVAETAVVGCADDLTGQAVYAFVTMKPEKEADLSKELAIQVRKVIGPFAAPKKIYLVSDLPKTRSGKIMRRVLRKIVAPQIVEEVKQKV 680
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290|      304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594||     610       620       630       640       650||     678  
                                                                                                                                                                                                                                                                                                                 290|                                                                                                                                                                                                                                                                                                         595|                                              651|          
                                                                                                                                                                                                                                                                                                                  295                                                                                                                                                                                                                                                                                                          602                                               670          

Chain C from PDB  Type:PROTEIN  Length:567
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhh.....hhhhhhhhhhhhh.........ee........ee....eehhhhhhhhhhhhhh...eeeeee..hhhhheeeehhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhh..eeeee..eee..eeehhhhhhhhhhh......eeeee.............eeehhhhhh..........ee.....eeeee...eeeee.hhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhh..eeeehhhhhhhhhh..hhhhhh.......eeee.....hhhhhhhhhhh......eeee...hhhhh..........................eeeee....ee.....eeeeeee.........ee..hhhhhhhhhh......eeeeeeeee.....eeeeee...ee..ee.hhhhhhhhhhh...eeeeeee....eeeeee...hhhhhhhhhhhhhhhhh..eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ifi C  39 RPKPHIGPNYESYVKEWAKTVGPNSDEWWAAKARETLDWYDDFKTVRAGGFEHGDVQWFPEGTLNAAYNCLDRHYYKNPKKTAIIYEADEPSESREVSYEELMQETCRVANVLKSYGVKKGDAVSIYLPMTWQAAAAFLACARIGAIHSAVFAGFSAESLRDRVNDCECKVLITTDEGRRGGKTIATKQIVDAALQQCPLVENVLVLRRTGNKVPMTEGRDKWWDEECAKMPAYCPCERMASEDPLFILYTSKPKGVVHSTAGYLLGTALTLKYVFDAHPDDRFACMADIGWITGHSYIIYGPLANGITTAVFESTPVYPTPSRYWDFVDKWKATQLYTAPTAIRLLRRMGEDHVKNHDLSSLRVLGSVGEPINPEAWHWYNDFAGKNQCAIVDTYWMTETGSISIAPLPGAISTKPGSATFPFFGMDVDIIDPQTGQVLEGNDVEGVLVARRPWPSIARTVYRDHKRYLETYMKPYPGYFFFGDGAARDYDGYMWIKGRVDINVSGHRLSTAEVESALILHKGVAETAVVGCAVYAFVTMKPLSKELAIQVRKVIGPFAAPKKIYL 629
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288 ||    302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542 ||    554       564       574  ||   591  ||   612       622       
                                                                                                                                                                                                                                                                                     290|                                                                                                                                                                                                                                                      544|                           577|      594|                       
                                                                                                                                                                                                                                                                                      295                                                                                                                                                                                                                                                       547                            585       606                       

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IFI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IFI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IFI)

(-) Gene Ontology  (8, 8)

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        J9VFT1_CRYNH | J9VFT15vpv
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