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(-) Description

Title :  CRYSTAL STRUCTURE PUTATIVE AUTOLYSIN FROM LISTERIA MONOCYTOGENES
 
Authors :  C. Chang, M. Zhou, S. Shatsman, W. F. Anderson, A. Joachimiak, Center F Structural Genomics Of Infectious Diseases (Csgid)
Date :  04 May 16  (Deposition) - 18 May 16  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Autolysin, Csgid, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, M. Zhou, S. Shatsman, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Putative Autolysin From Listeria Monocytogenes
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LMO1076 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Plasmid: PMCSG53
    Expression System Taxid: 866768
    Fragment: UNP RESIDUES 233-491
    Gene: LMO1076
    Organism Scientific: LISTERIA MONOCYTOGENES SEROVAR 1/2A (STRAIN ATCC BAA-679 / EGD-E)
    Organism Taxid: 169963
    Strain: ATCC BAA-679 / EGD-E

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MSE3Mod. Amino AcidSELENOMETHIONINE
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
4SO43Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:324 , THR A:345 , HIS A:409 , HOH A:605binding site for residue GOL A 501
2AC2SOFTWAREILE A:249 , GLN A:251 , GLN A:252 , GLN A:417 , SER A:418 , ASN A:419 , LYS A:464binding site for residue GOL A 502
3AC3SOFTWARELYS A:323 , SER A:348binding site for residue GOL A 503
4AC4SOFTWAREASP A:247 , THR A:248 , LYS A:250 , ARG A:388 , ARG A:406 , HOH A:613binding site for residue SO4 A 504
5AC5SOFTWARELYS A:250 , ASN A:350 , GLY A:351 , LYS A:364 , HOH A:601binding site for residue SO4 A 505
6AC6SOFTWARELYS A:431binding site for residue SO4 A 506
7AC7SOFTWARELYS A:260 , TYR A:329binding site for residue PEG A 507
8AC8SOFTWAREHIS A:409 , TYR A:439 , ASN A:440 , ARG A:470binding site for residue PEG A 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JQC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JQC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JQC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JQC)

(-) Exons   (0, 0)

(no "Exon" information available for 5JQC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeee......ee...............ee.hhhh..eeeeeeeeee..eeeeeeee..eeeeeee...eee....eeeeeeeeeeee.hhhhh.ee..........eee..hhhhh..eeeeeeeeee..eeeeeeee..eeeeeee...eee.....eeeeeeeeeee......ee.......hhhhh...ee.hhhh.eeeeeeeeeee..eeeeeeee..eeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jqc A 244 TLYDTIKQQKNVSEDAKVVKADGHGVYSGIYNTSAASAKKLSTGAPYNNKDVKILKEGTTSRGTWVQFSLNNKVIGWmDKRAFVYYPKATNVKTLNLTGKITAGSTNGLWSEVPGTVNAKKLATTAGAYQNKDAKIIKQGQISGRTYYQFQVGGKTIGWLDARAFHVYDKIQSQSNVNWNRTILNADKHGVYSGVYNTSSSSmNKLSTGAKYNNKKVKVIKQAKTARGTWYQFQVNGKTVGWmDYRAF 491
                                   253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443  |    453       463       473       483  |     
                                                                                                       321-MSE                                                                                                                      446-MSE                                 486-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JQC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JQC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JQC)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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