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(-) Description

Title :  CRYSTAL STRUCTURE OF THE AUTOLYSIN AUTO (LMO1076) FROM LISTERIA MONOCYTOGENES, CATALYTIC DOMAIN
 
Authors :  M. Bublitz, L. Polle, C. Holland, M. Nimtz, D. W. Heinz, W. D. Schubert
Date :  11 Dec 08  (Deposition) - 07 Apr 09  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (4x)
Keywords :  Listeria Monocytogenes, Autolysin, N Acetylglucosaminidase, Peptidoglycan Hydrolase, Autoinhibition, Gh73, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Bublitz, L. Polle, C. Holland, D. W. Heinz, M. Nimtz, W. D. Schubert
Structural Basis For Autoinhibition And Activation Of Auto, A Virulence-Associated Peptidoglycan Hydrolase Of Listeria Monocytogenes.
Mol. Microbiol. V. 71 1509 2009
PubMed-ID: 19210622  |  Reference-DOI: 10.1111/J.1365-2958.2009.06619.X

(-) Compounds

Molecule 1 - LMO1076 PROTEIN
    Chains: A
    EC Number: 3.2.1.96
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM30
    Expression System Strain: BL21 CODON PLUS (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: FUSED RESIDUES 52-71 AND 84-243
    Gene: LMO1076
    Organism Scientific: LISTERIA MONOCYTOGENES SEROVAR 1/2A (STRAIN ATCC BAA-679 / EGD-E)
    Organism Taxid: 169963
    Other Details: A FUSION OF THREE NON-PHYSIOLOGICAL RESIDUES (GAM), LMO1076 52-71, LMO1076 84-243
    Strain: EGD-E

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:18 , ALA A:84 , SER A:85 , THR A:86 , THR A:88 , PHE A:89 , HOH A:300BINDING SITE FOR RESIDUE SO4 A 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FI7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:133 -Pro A:134

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:177
 aligned with Q8Y842_LISMO | Q8Y842 from UniProtKB/TrEMBL  Length:572

    Alignment length:189
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234         
         Q8Y842_LISMO    55 EPVFSLEQNRDDAMAALVVPQTRNSFLRAASTPTFQQTFINSISTQAMDLCKKYNLYPSVMIAQAALESNWGRSELGKAPNYNLFGIKGSYNGKSVTMKTWEYSDSKGWYQINANFAKYPSHKESLEDNAKKLRNGPSWDSSYYKGAWRENAKTYKDATAWLQGRYATDNTYASKLNTLISSYNLTQYD 243
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh------------....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh........................eeeeeeeeee...eeeeeeeeee...hhhhhhhhhhhhhhhh.......hhhhh.....hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fi7 A  55 EPVFSLEQNRDDAMAAL------------ASTPTFQQTFINSISTQAMDLCKKYNLYPSVMIAQAALESNWGRSELGKAPNYNLFGIKGSYNGKSVTMKTWEYSDSKGWYQINANFAKYPSHKESLEDNAKKLRNGPSWDSSYYKGAWRENAKTYKDATAWLQGRYATDNTYASKLNTLISSYNLTQYD 243
                                    64      |  -        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234         
                                           71           84
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FI7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FI7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FI7)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q8Y842_LISMO | Q8Y842)
molecular function
    GO:0004040    amidase activity    Catalysis of the reaction: a monocarboxylic acid amide + H2O = a monocarboxylate + NH3.

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        Q8Y842_LISMO | Q8Y842: 5jqc

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