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(-) Description

Title :  MECHANISTIC AND STRUCTURAL ANALYSIS OF SUBSTRATE RECOGNITION AND COFACTOR BINDING BY AN UNUSUAL BACTERIAL PROLYL HYDROXYLASE - CO-BAP4H-MLI
 
Authors :  N. J. Schnicker, M. Dey
Date :  21 Feb 16  (Deposition) - 27 Apr 16  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  P4H, Dioxygenase, Cupin, Fe(Ii)/Alpha-Ketoglutarate, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. J. Schnicker, M. Dey
Bacillus Anthracis Prolyl 4-Hydroxylase Modifies Collagen-Like Substrates In Asymmetric Patterns.
J. Biol. Chem. V. 291 13360 2016
PubMed-ID: 27129244  |  Reference-DOI: 10.1074/JBC.M116.725432

(-) Compounds

Molecule 1 - PROCOLLAGEN-PROLINE DIOXYGENASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 18-232
    Gene: BASH2_01493
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1CO2Ligand/IonCOBALT (II) ION
2MLI2Ligand/IonMALONATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:127 , ASP A:129 , HIS A:193 , MLI A:302 , HOH A:495 , HOH A:506binding site for residue CO A 301
2AC2SOFTWARETYR A:124 , HIS A:127 , THR A:159 , HIS A:193 , GLY A:195 , LYS A:203 , ILE A:205 , CO A:301 , HOH A:495binding site for residue MLI A 302
3AC3SOFTWAREHIS B:127 , ASP B:129 , HIS B:193 , MLI B:302 , HOH B:476 , HOH B:487binding site for residue CO B 301
4AC4SOFTWARETYR B:124 , HIS B:127 , THR B:159 , HIS B:193 , GLY B:195 , LYS B:203 , ILE B:205 , CO B:301 , HOH B:476binding site for residue MLI B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IAV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:38 -Pro A:39
2Glu B:38 -Pro B:39

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IAV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IAV)

(-) Exons   (0, 0)

(no "Exon" information available for 5IAV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee....eeeeeeee....eeeee...hhhhhhhhhhhhhh............ee...hhhhhhhhhhhhhhhh.hhhhh...eeeeee....eeee.......hhhhhh.eeeeeeee.....ee..eee....eee......eeeee....hhhhhhh..eee..eee.eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iav A  12 EQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSSSGAFLDDNELTAKIEKRISSIMNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGGETFFPKLNLSVHPRKGMAVYFEYFYQDQSLNELTLHGGAPVTKGEKWIATQWVRRGTYK 216
                                    21        31        41        51        61        71|       90       100       110       120       130       140       150       160       170       180       190       200       210      
                                                                                      71|                                                                                                                                       
                                                                                       81                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee....eeeeeeee....eeeee...hhhhhhhhhhhhhh..........ee...hhhhhhhhhhhhhhhh.hhhhh...eeeeee....eeee........hhhhh.eeeeeeee.....ee..eee....eee......eeeee....hhhhhhh..eee..eee.eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iav B  12 EQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSGAFLDDNELTAKIEKRISSIMNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGGETFFPKLNLSVHPRKGMAVYFEYFYQDQSLNELTLHGGAPVTKGEKWIATQWVRRGTYK 216
                                    21        31        41        51        61        82        92       102       112       122       132       142       152       162       172       182       192       202       212    
                                                                                     70|                                                                                                                                      
                                                                                      82
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IAV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IAV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IAV)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q81LZ8_BACAN | Q81LZ8: 3itq 5hv0 5hv4 5iat 5iax

(-) Related Entries Specified in the PDB File

5iat 5iax